jlboat/BioinfoContainers:bwa
$ singularity pull shub://jlboat/BioinfoContainers:bwa
Singularity Recipe
Bootstrap: docker
From: ubuntu:latest
%labels
Topic Bioinformatics
Input FASTQ
Output BAM
Use Alignment
Version latest
%post
apt-get update --fix-missing && apt-get install -y git g++ zlib1g gcc make zlib1g-dev curl && rm -rf /var/lib/apt/lists/*
cd /opt/
git clone https://github.com/lh3/bwa.git
cd bwa; make
apt-get autoclean
apt-get remove -y git g++ gcc make curl
chmod -R 777 /opt/bwa
%runscript
exec /opt/bwa/bwa "$@"
Collection
- Name: jlboat/BioinfoContainers
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/jlboat-BioinfoContainers-bwa |
collection name | jlboat/BioinfoContainers |
branch | master |
tag | bwa |
commit | 01fd237ed1c7688e532770e499b506f0d189a7b5 |
version (container hash) | 070bd5e1b70d641eba9546b2e3d7f354 |
build date | 2019-09-24T17:40:19.148Z |
size (MB) | 302 |
size (bytes) | 99827743 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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