jlboat/BioinfoContainers:bwa

$ singularity pull shub://jlboat/BioinfoContainers:bwa

Singularity Recipe

Bootstrap: docker

From: ubuntu:latest

%labels
    Topic Bioinformatics
    Input FASTQ
    Output BAM
    Use Alignment
    Version latest

%post
    apt-get update --fix-missing && apt-get install -y git g++ zlib1g gcc make zlib1g-dev curl && rm -rf /var/lib/apt/lists/*
    cd /opt/
    git clone https://github.com/lh3/bwa.git
    cd bwa; make
    apt-get autoclean
    apt-get remove -y git g++ gcc make curl
    chmod -R 777 /opt/bwa

%runscript
    exec /opt/bwa/bwa "$@"

Collection


View on Datalad

Metrics

key value
id /containers/jlboat-BioinfoContainers-bwa
collection name jlboat/BioinfoContainers
branch master
tag bwa
commit 01fd237ed1c7688e532770e499b506f0d189a7b5
version (container hash) 070bd5e1b70d641eba9546b2e3d7f354
build date 2019-09-24T17:40:19.148Z
size (MB) 302
size (bytes) 99827743
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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