jlboat/BioinfoContainers:beagle
$ singularity pull shub://jlboat/BioinfoContainers:beagle
Singularity Recipe
Bootstrap: docker
From: debian:latest
%help
# Run as below for beagle help
singularity run beagle.simg
%labels
Topic Bioinformatics
Input BCL
Output FASTQ
beagle 5.0
%post
apt-get update --fix-missing && apt-get install -y wget openjdk-8-jre && rm -rf /var/lib/apt/lists/*
cd /opt
wget https://faculty.washington.edu/browning/beagle/beagle.28Sep18.793.jar
apt-get remove -y wget
apt autoremove -y
chmod 777 /opt
%runscript
exec java -jar /opt/beagle.28Sep18.793.jar "$@"
Collection
- Name: jlboat/BioinfoContainers
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/jlboat-BioinfoContainers-beagle |
collection name | jlboat/BioinfoContainers |
branch | master |
tag | beagle |
commit | 01fd237ed1c7688e532770e499b506f0d189a7b5 |
version (container hash) | 348867ee6bf90928378485d4b4e9da6a |
build date | 2019-05-09T08:14:51.136Z |
size (MB) | 528 |
size (bytes) | 195604511 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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