jlboat/BioinfoContainers:beagle

$ singularity pull shub://jlboat/BioinfoContainers:beagle

Singularity Recipe

Bootstrap: docker

From: debian:latest

%help
    # Run as below for beagle help
    singularity run beagle.simg 

%labels
    Topic Bioinformatics
    Input BCL
    Output FASTQ
    beagle 5.0

%post
    apt-get update --fix-missing && apt-get install -y wget openjdk-8-jre && rm -rf /var/lib/apt/lists/*
    cd /opt
    wget https://faculty.washington.edu/browning/beagle/beagle.28Sep18.793.jar
    apt-get remove -y wget
    apt autoremove -y
    chmod 777 /opt

%runscript
    exec java -jar /opt/beagle.28Sep18.793.jar "$@"

Collection


View on Datalad

Metrics

key value
id /containers/jlboat-BioinfoContainers-beagle
collection name jlboat/BioinfoContainers
branch master
tag beagle
commit 01fd237ed1c7688e532770e499b506f0d189a7b5
version (container hash) 348867ee6bf90928378485d4b4e9da6a
build date 2019-05-09T08:14:51.136Z
size (MB) 528
size (bytes) 195604511
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.