jlboat/BioinfoContainers:bcl2fastq
$ singularity pull shub://jlboat/BioinfoContainers:bcl2fastq
Singularity Recipe
Bootstrap: docker
From: centos:latest
%help
singularity run bcl2fastq.simg -h
%labels
Topic Bioinformatics
Input BCL
Output FASTQ
bcl2fastq v2.20.0.422
%post
yum install -y unzip wget
wget https://support.illumina.com/content/dam/illumina-support/documents/downloads/software/bcl2fastq/bcl2fastq2-v2-20-0-linux-x86-64.zip -O /opt/bcl2fastq2-v2-20-0-linux-x86-64.zip
unzip /opt/bcl2fastq2-v2-20-0-linux-x86-64.zip
ls
rpm -i bcl2fastq2-v2.20.0.422-Linux-x86_64.rpm
rm /opt/bcl2fastq2-v2-20-0-linux-x86-64.zip
rm /bcl2fastq2-v2.20.0.422-Linux-x86_64.rpm
%runscript
exec bcl2fastq "$@"
Collection
- Name: jlboat/BioinfoContainers
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/jlboat-BioinfoContainers-bcl2fastq |
collection name | jlboat/BioinfoContainers |
branch | master |
tag | bcl2fastq |
commit | 5f15386e1057282311ce1b4a7cae3f747425ed6b |
version (container hash) | 66d6f1f9c302062c0b2b5d7544d096d1 |
build date | 2020-08-04T07:13:55.512Z |
size (MB) | 284 |
size (bytes) | 101441567 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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