jlboat/BioinfoContainers:bcl2fastq

$ singularity pull shub://jlboat/BioinfoContainers:bcl2fastq

Singularity Recipe

Bootstrap: docker

From: centos:latest

%help
    singularity run bcl2fastq.simg -h

%labels
    Topic Bioinformatics
    Input BCL
    Output FASTQ
    bcl2fastq v2.20.0.422

%post
    yum install -y unzip wget
    wget https://support.illumina.com/content/dam/illumina-support/documents/downloads/software/bcl2fastq/bcl2fastq2-v2-20-0-linux-x86-64.zip -O /opt/bcl2fastq2-v2-20-0-linux-x86-64.zip
    unzip /opt/bcl2fastq2-v2-20-0-linux-x86-64.zip
    ls 
    rpm -i bcl2fastq2-v2.20.0.422-Linux-x86_64.rpm 
    rm /opt/bcl2fastq2-v2-20-0-linux-x86-64.zip
    rm /bcl2fastq2-v2.20.0.422-Linux-x86_64.rpm

%runscript
    exec bcl2fastq "$@"

Collection


View on Datalad

Metrics

key value
id /containers/jlboat-BioinfoContainers-bcl2fastq
collection name jlboat/BioinfoContainers
branch master
tag bcl2fastq
commit 5f15386e1057282311ce1b4a7cae3f747425ed6b
version (container hash) 66d6f1f9c302062c0b2b5d7544d096d1
build date 2020-08-04T07:13:55.512Z
size (MB) 284
size (bytes) 101441567
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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