jlboat/BioinfoContainers:bcftools
$ singularity pull shub://jlboat/BioinfoContainers:bcftools
Singularity Recipe
Bootstrap: docker
From: ubuntu:latest
%labels
Topic Bioinformatics
Input BCF
bcftools 1.9
%post
apt-get update --fix-missing && apt-get install -y wget make zlib1g-dev gcc \
pkg-config autoconf libncurses5-dev libbz2-dev liblzma-dev libcurl4-gnutls-dev libssl-dev
cd /opt/
wget --quiet https://github.com/samtools/bcftools/releases/download/1.9/bcftools-1.9.tar.bz2
tar xvfj bcftools-1.9.tar.bz2
rm bcftools-1.9.tar.bz2
cd bcftools-1.9
./configure
make
make install
chmod -R 777 /opt/*
%runscript
exec bcftools "$@"
Collection
- Name: jlboat/BioinfoContainers
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/jlboat-BioinfoContainers-bcftools |
collection name | jlboat/BioinfoContainers |
branch | master |
tag | bcftools |
commit | 5f15386e1057282311ce1b4a7cae3f747425ed6b |
version (container hash) | b3d4788a767083104db5b1251bf305e9 |
build date | 2020-09-16T08:06:18.589Z |
size (MB) | 427 |
size (bytes) | 146665503 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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