jdwheaton/singularity-ngs:star_htseq

$ singularity pull shub://jdwheaton/singularity-ngs:star_htseq

Singularity Recipe

bootstrap: docker
From: centos:7

%post
	yum -y update
	yum -y install wget git gzip bzip2 gcc gcc-c++ make zlib-devel epel-release
	yum -y install python-pip
	cd /
	wget https://github.com/alexdobin/STAR/archive/2.6.0a.tar.gz
	tar -xzf 2.6.0a.tar.gz
	cd STAR-2.6.0a/source
	make
	pip install HTSeq
	
%environment
	export PATH=$PATH:/STAR-2.6.0a/source

Collection


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Metrics

key value
id /containers/jdwheaton-singularity-ngs-star_htseq
collection name jdwheaton/singularity-ngs
branch master
tag star_htseq
commit c21ec4a88f680bfd258980617240e4d66e9c47a9
version (container hash) a8f9502c230f5824bc33ee1a26376d79
build date 2020-06-05T17:22:24.649Z
size (MB) 662
size (bytes) 229560351
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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