jdwheaton/singularity-ngs:sra_tools
$ singularity pull shub://jdwheaton/singularity-ngs:sra_tools
Singularity Recipe
Bootstrap: docker
From: centos:7
%post
# Install required build tools
yum -y update
yum -y install tar wget
cd /
wget http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.9.0/sratoolkit.2.9.0-centos_linux64.tar.gz
tar -xvzf sratoolkit.2.9.0-centos_linux64.tar.gz
rm sratoolkit.2.9.0-centos_linux64.tar.gz
%environment
export PATH=$PATH:/sratoolkit.2.9.0-centos_linux64/bin
Collection
- Name: jdwheaton/singularity-ngs
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/jdwheaton-singularity-ngs-sra_tools |
collection name | jdwheaton/singularity-ngs |
branch | master |
tag | sra_tools |
commit | c340d120f62540d323bba7f282da8f7d2b0347f6 |
version (container hash) | 2444e8a881a655c7adb0d10c7d3e777a |
build date | 2018-05-20T23:46:11.593Z |
size (MB) | 564 |
size (bytes) | 172896287 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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