jacobhepkema/singularity-bio-julia:latest
$ singularity pull shub://jacobhepkema/singularity-bio-julia:latest
Singularity Recipe
Bootstrap: docker
From: julia:1.2.0
%help
Julia 1.2
%labels
Maintainer @jacobhepkema
Version v0.1
%post
JULIA_PKGDIR=/opt/julia
JULIA_VERSION=1.2.0
export JULIA_DEPOT_PATH=/opt/julia
export JULIA_PATH=/usr/local/julia
export PATH=$JULIA_PATH/bin:$PATH
mkdir -p "$JULIA_DEPOT_PATH"
# Will this make 'ps' work?
apt-get update && apt-get install -y procps
julia -e 'using Pkg;pkg"add Dates Parsers PooledArrays WeakRefStrings FilePathsBase LazyArrays Libdl Mmap CategoricalArrays Missings InvertedIndices Tables TableTraits IteratorInterfaceExtensions DataAPI Unicode SortingAlgorithms Reexport TextWrap Compat Blosc ArgParse DataFrames CSV Profile Random Statistics HDF5 BioSequences Bio DelimitedFiles;precompile"'
chmod -R 777 /opt
chmod -R 777 /usr/local/julia
%environment
export JULIA_DEPOT_PATH=/opt/julia
export JULIA_PKGDIR=/opt/julia
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
export JULIA_PATH=/usr/local/julia
export PATH=$JULIA_PATH/bin:$PATH
# smoke test
julia --version
%runscript
exec julia -e "$@"
Collection
- Name: jacobhepkema/singularity-bio-julia
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/jacobhepkema-singularity-bio-julia-latest |
collection name | jacobhepkema/singularity-bio-julia |
branch | master |
tag | latest |
commit | b059107e72569e03181ffef82848c664f984576c |
version (container hash) | 224fe936020ac5b19e47764f2cbb7073 |
build date | 2020-02-10T13:23:04.347Z |
size (MB) | 789.0 |
size (bytes) | 289447967 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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