jacobhepkema/scanem-r:latest

$ singularity pull shub://jacobhepkema/scanem-r:latest

Singularity Recipe

Bootstrap: docker
From: rocker/r-ver:3.6.0

%labels
    Maintainer @jacobhepkema
    Version v0.1
  
%post
    apt-get update && apt-get install -y --no-install-recommends procps lbzip2 libhdf4-alt-dev libhdf5-dev libxml-parser-perl && install2.r --error BiocManager optparse stringr pracma hashmap reshape2 ggplot2 dplyr viridis gridExtra igraph ade4 && R -e "BiocManager::install(c('rhdf5', 'pheatmap', 'Biostrings', 'ggseqlogo', 'ggrepel', 'DelayedMatrixStats', 'xtable'), update=FALSE, ask=FALSE)"

# smoke test
R --version

%runscript
    exec Rscript "$@"

Collection


View on Datalad

Metrics

key value
id /containers/jacobhepkema-scanem-r-latest
collection name jacobhepkema/scanem-r
branch master
tag latest
commit b3a9904f2c02118ac45617a5bc366d60a95c12e6
version (container hash) fe5406cae559ddc46ad733deec7ee27d
build date 2021-03-11T15:21:29.124Z
size (MB) 1228.0
size (bytes) 425115679
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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