jacobhepkema/scanem-motif:latest
$ singularity pull shub://jacobhepkema/scanem-motif:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu:18.04
# Based on https://github.com/icaoberg/docker-meme-suite/blob/master/Dockerfile
%labels
Maintainer @jacobhepkema
Version v0.3
%post
# Install prerequisites
apt-get update && apt-get install -y procps libopenmpi-dev openmpi-bin ghostscript libgs-dev libgd-dev libexpat1-dev zlib1g-dev libxml2-dev autoconf automake libtool libhtml-template-compiled-perl libxml-opml-simplegen-perl libxml-libxml-debugging-perl sudo curl openssh-server
PERL_MM_USE_DEFAULT=1 perl -MCPAN -e 'install Log::Log4perl'
PERL_MM_USE_DEFAULT=1 perl -MCPAN -e 'install Math::CDF'
PERL_MM_USE_DEFAULT=1 perl -MCPAN -e 'install CGI'
PERL_MM_USE_DEFAULT=1 perl -MCPAN -e 'install HTML::PullParser'
PERL_MM_USE_DEFAULT=1 perl -MCPAN -e 'install HTML::Template'
PERL_MM_USE_DEFAULT=1 perl -MCPAN -e 'install XML::Simple'
PERL_MM_USE_DEFAULT=1 perl -MCPAN -e 'install XML::Parser::Expat'
PERL_MM_USE_DEFAULT=1 perl -MCPAN -e 'install XML::LibXML'
PERL_MM_USE_DEFAULT=1 perl -MCPAN -e 'install XML::LibXML::Simple'
PERL_MM_USE_DEFAULT=1 perl -MCPAN -e 'install XML::Compile'
PERL_MM_USE_DEFAULT=1 perl -MCPAN -e 'install XML::Compile::SOAP11'
PERL_MM_USE_DEFAULT=1 perl -MCPAN -e 'install XML::Compile::WSDL11'
PERL_MM_USE_DEFAULT=1 perl -MCPAN -e 'install XML::Compile::Transport::SOAPHTTP'
mkdir /opt/meme
# Get meme suite
curl http://meme-suite.org/meme-software/5.1.0/meme-5.1.0.tar.gz > /opt/meme/meme-5.1.0.tar.gz
cd /opt/meme
tar zxvf meme-5.1.0.tar.gz && rm -fv meme-5.1.0.tar.gz
cd /opt/meme/meme-5.1.0 && ./configure --prefix=/opt --enable-build-libxml2 --enable-build-libxslt --with-url=http://meme-suite.org && make && make install && rm -rfv /opt/meme
export PATH=/opt/bin:$PATH
# smoke test
meme -version
%runscript
exec /bin/bash "$@"
Collection
- Name: jacobhepkema/scanem-motif
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/jacobhepkema-scanem-motif-latest |
collection name | jacobhepkema/scanem-motif |
branch | master |
tag | latest |
commit | 01923b492278043153ff190769448d0840576868 |
version (container hash) | 134b4ef2231b2ee3f7189387b4b0fb32 |
build date | 2020-01-08T13:11:11.465Z |
size (MB) | 830.0 |
size (bytes) | 269623327 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.