j-andrews7/singularity-r:latest
$ singularity pull shub://j-andrews7/singularity-r:latest
Singularity Recipe
BootStrap: docker
From: ubuntu:16.04
%labels
Maintainer Jared Andrews
R_Version 4.0.2
%apprun R
exec R "${@}"
%apprun Rscript
exec Rscript "${@}"
%runscript
exec R "${@}"
%post
# Software versions
export R_VERSION=4.0.2
# Get dependencies
apt-get update
apt-get install -y --no-install-recommends \
locales \
aptitude
# Configure default locale
echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen
locale-gen en_US.utf8
/usr/sbin/update-locale LANG=en_US.UTF-8
export LC_ALL=en_US.UTF-8
export LANG=en_US.UTF-8
# Install R
echo "deb http://cran.r-project.org/bin/linux/ubuntu xenial-cran40/" > /etc/apt/sources.list.d/r.list
apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
apt-get update
aptitude install -y \
r-base=${R_VERSION}* \
r-base-core=${R_VERSION}* \
r-base-dev=${R_VERSION}* \
r-recommended=${R_VERSION}* \
r-base-html=${R_VERSION}* \
r-doc-html=${R_VERSION}* \
libcurl4-openssl-dev \
libssl-dev \
libxml2-dev \
libcairo2-dev \
libxt-dev \
libpng-dev \
libfreetype6-dev \
libtiff5-dev \
libjpeg-dev \
libgsl-dev \
librsvg2-dev \
libnode-dev \
libv8-dev \
software-properties-common
# Add a default CRAN mirror
echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl')" >> /usr/lib/R/etc/Rprofile.site
# Add a directory for host R libraries
mkdir -p /library
echo "R_LIBS_SITE=/library:\${R_LIBS_SITE}" >> /usr/lib/R/etc/Renviron.site
# Update python
add-apt-repository ppa:deadsnakes/ppa
apt-get update
apt-get install -y python3.8 python3.8-dev python3.8-distutils python3.8-venv
# Create/activate virtualenv
python3.8 -m venv dev3.8/
. dev3.8/bin/activate
# Clean up
rm -rf /var/lib/apt/lists/*
Collection
- Name: j-andrews7/singularity-r
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/j-andrews7-singularity-r-latest |
collection name | j-andrews7/singularity-r |
branch | master |
tag | latest |
commit | aa9f4ba080c244f625013a5ec5b4c4ac542cd9db |
version (container hash) | fd2768431ff1f8a0d5774894626850d4 |
build date | 2021-04-09T20:13:14.640Z |
size (MB) | 893.0 |
size (bytes) | 330817567 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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