incertae-sedis/cavatica:latest
$ singularity pull shub://incertae-sedis/cavatica:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu
%post
apt-get -y update
apt-get install -y git
git clone -b singularity_implementation https://github.com/TeamMango/cavatica.git
chmod -R go+rw /cavatica/
DEBIAN_FRONTEND=noninteractive apt-get install -y r-base
echo "install.packages(\"ggplot2\", repos=\"https://cran.rstudio.com\")" | R --no-save
echo "install.packages(\"readr\", repos=\"https://cran.rstudio.com\")" | R --no-save
%runscript
cd /cavatica/data/output
ln -s ../test/*.tsv .
../../code/script.sh
find /cavatica/data/output -type l | xargs rm
%environment
export PATH=/:$PATH
Collection
- Name: incertae-sedis/cavatica
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/incertae-sedis-cavatica-latest |
collection name | incertae-sedis/cavatica |
branch | master |
tag | latest |
commit | f4fe278de8d2b5cc0b1a3cd0b5b4822a9336edf5 |
version (container hash) | 4110f0b27a42c198625afa0aac438e09 |
build date | 2018-08-09T02:18:32.499Z |
size (MB) | 1182 |
size (bytes) | 556273695 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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