incertae-sedis/cavatica:latest

$ singularity pull shub://incertae-sedis/cavatica:latest

Singularity Recipe

Bootstrap: docker
From: ubuntu
%post
    apt-get -y update
    apt-get install -y git
    git clone -b singularity_implementation https://github.com/TeamMango/cavatica.git
    chmod -R go+rw /cavatica/ 
    DEBIAN_FRONTEND=noninteractive apt-get install -y r-base 
    echo "install.packages(\"ggplot2\", repos=\"https://cran.rstudio.com\")" | R --no-save
    echo "install.packages(\"readr\", repos=\"https://cran.rstudio.com\")" | R --no-save
%runscript    
    cd /cavatica/data/output
    ln -s ../test/*.tsv .
    ../../code/script.sh
    find /cavatica/data/output -type l | xargs rm
%environment
    export PATH=/:$PATH

Collection


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Metrics

key value
id /containers/incertae-sedis-cavatica-latest
collection name incertae-sedis/cavatica
branch master
tag latest
commit f4fe278de8d2b5cc0b1a3cd0b5b4822a9336edf5
version (container hash) 4110f0b27a42c198625afa0aac438e09
build date 2018-08-09T02:18:32.499Z
size (MB) 1182
size (bytes) 556273695
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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