ikmb/ensembl-api:latest

$ singularity pull shub://ikmb/ensembl-api:latest

Singularity Recipe

Bootstrap:docker
From:nfcore/base

%labels
    MAINTAINER Marc Hoeppner <m.hoeppner@ikmb.uni-kiel.de>
    DESCRIPTION Singularity image containing all requirements for the exome-seq pipeline
    VERSION 1.0

%environment
    PATH=/opt/conda/envs/ensembl-api/bin:$PATH
    export PATH
    PERL5LIB /opt/ensembl/99/ensembl/modules:/opt/ensembl/99/ensembl-compara/modules:/opt/ensembl/99/ensembl-variation/modules:/opt/ensembl/99/ensembl-funcgen/modules:$PERL5LIB
    export PERL5LIB
%files
    environment.yml /
    install_api.sh /opt
%post

    /opt/conda/bin/conda env create -f /environment.yml
    /opt/conda/bin/conda clean -a

    mkdir -p /ifs
    apt-get -y install procps


    mkdir -p /opt/ensembl/99
    cd /opt/ensembl/99 && bash /opt/install_api.sh 99

Collection


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Metrics

key value
id /containers/ikmb-ensembl-api-latest
collection name ikmb/ensembl-api
branch master
tag latest
commit 7c7a26864d28f2442ba3dba0724501ac1a3ae7ff
version (container hash) 586a9124fa0a940b0a386c2d6e187fb2
build date 2020-07-15T07:45:54.564Z
size (MB) 2047.0
size (bytes) 1022791711
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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