ikmb/ensembl-api:latest
$ singularity pull shub://ikmb/ensembl-api:latest
Singularity Recipe
Bootstrap:docker
From:nfcore/base
%labels
MAINTAINER Marc Hoeppner <m.hoeppner@ikmb.uni-kiel.de>
DESCRIPTION Singularity image containing all requirements for the exome-seq pipeline
VERSION 1.0
%environment
PATH=/opt/conda/envs/ensembl-api/bin:$PATH
export PATH
PERL5LIB /opt/ensembl/99/ensembl/modules:/opt/ensembl/99/ensembl-compara/modules:/opt/ensembl/99/ensembl-variation/modules:/opt/ensembl/99/ensembl-funcgen/modules:$PERL5LIB
export PERL5LIB
%files
environment.yml /
install_api.sh /opt
%post
/opt/conda/bin/conda env create -f /environment.yml
/opt/conda/bin/conda clean -a
mkdir -p /ifs
apt-get -y install procps
mkdir -p /opt/ensembl/99
cd /opt/ensembl/99 && bash /opt/install_api.sh 99
Collection
- Name: ikmb/ensembl-api
- License: GNU General Public License v3.0
View on Datalad
Metrics
key | value |
---|---|
id | /containers/ikmb-ensembl-api-latest |
collection name | ikmb/ensembl-api |
branch | master |
tag | latest |
commit | 7c7a26864d28f2442ba3dba0724501ac1a3ae7ff |
version (container hash) | 586a9124fa0a940b0a386c2d6e187fb2 |
build date | 2020-07-15T07:45:54.564Z |
size (MB) | 2047.0 |
size (bytes) | 1022791711 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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