ii-bioinfo/R3.5.1_Bioc3.8_rstudio1.1.463:latest

$ singularity pull shub://ii-bioinfo/R3.5.1_Bioc3.8_rstudio1.1.463:latest

Singularity Recipe

Bootstrap: docker
FROM: bioconductor/release_core2:R3.5.1_Bioc3.8

%help
  RStudio Desktop version 1.1.463
  R version 3.5.1

  Usage:
  $ singularity run rstudio.3.5.1.simg [args]
  $ singularity run --app R rstudio.3.5.1.simg [args]
  $ singularity run --app Rscript rstudio.3.5.1.simg [args]
  $ singularity run --app rstudio rstudio.3.5.1.simg

%setup

%files

%labels
  ii-bioinfo@imp.ac.at
  RStudio_Version 1.1.463
  R_Version 3.5.1
  based on "https://github.com/mjstealey/rstudio"

%environment
  RSTUDIO_VERSION=1.1.463
  R_BASE_VERSION=3.5.1
  LC_ALL=en_US.UTF-8
  LANG=en_US.UTF-8

%post
  export RSTUDIO_VERSION=1.1.463
  apt-get update
  apt-get install -y \
    wget \
    gdebi-core \
    libxslt1-dev \
    qt5-default \
    mesa-utils \
    libgl1-mesa-glx \
    libgl1-mesa-dev \
    libxt6 \
    openssh-client

  R -e "install.packages('caTools')" #needed in rstudio

  wget \
    --no-verbose \
     "https://download1.rstudio.org/rstudio-xenial-${RSTUDIO_VERSION}-amd64.deb"

  gdebi -n rstudio-xenial-${RSTUDIO_VERSION}-amd64.deb
  rm -f rstudio-xenial-${RSTUDIO_VERSION}-amd64.deb
  rm -rf /var/lib/apt/lists/*

%apprun R
  exec R "${@}"

%apprun Rscript
  exec Rscript "${@}"

%apprun rstudio
  exec rstudio "${@}"

%runscript
  exec "${@}"

%test
  exec R --version

Collection


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Metrics

key value
id /containers/ii-bioinfo-R3.5.1_Bioc3.8_rstudio1.1.463-latest
collection name ii-bioinfo/R3.5.1_Bioc3.8_rstudio1.1.463
branch master
tag latest
commit ce5378b5bdbcbbee3675a4d1cf91989f92575161
version (container hash) 466a148297af2c7c793c0177f9a7efa6
build date 2021-01-18T14:29:57.463Z
size (MB) 2589
size (bytes) 798650399
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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