iferres/pagoo_publication_scripts:latest

$ singularity pull shub://iferres/pagoo_publication_scripts:latest

Singularity Recipe

Bootstrap: docker
From: conda/miniconda3

%files
	environment.yml /opt/environment.yml

%post
	apt-get update
	apt-get install build-essential -y
	apt-get clean && apt-get autoclean && apt-get autoremove
	
	conda env create -f /opt/environment.yml && conda clean -afy

	export PATH="/usr/local/envs/pagoo/bin:$PATH"

        pip3 install zenodo_get
	R --slave -e 'devtools::install_github("iferres/pagoo")'
	R --slave -e 'install.packages("rhierbaps", repos="http://cran.us.r-project.org")'

%environment
	export PATH="/usr/local/envs/pagoo/bin:$PATH"

%labels
	Authors: Ignacio Ferres (iferres@pasteur.edu.uy) & Gregorio Iraola (giraola@pasteur.edu.uy)
	Maintainer: Ignacio Ferres (iferres@pasteur.edu.uy)

Collection


View on Datalad

Metrics

key value
id /containers/iferres-pagoo_publication_scripts-latest
collection name iferres/pagoo_publication_scripts
branch main
tag latest
commit c0919622deb90a6e2e5035bb46340f98c226e6fb
version (container hash) ba939950d87135e4aefdc0ff12f0b13b
build date 2021-01-29T14:58:06.552Z
size (MB) 2665.0
size (bytes) 927166495
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.