iferres/Singularity_recipes:roary
$ singularity pull shub://iferres/Singularity_recipes:roary
Singularity Recipe
Bootstrap: docker
From: ubuntu:16.04
%post
apt update
apt upgrade -y
apt install -y wget bzip2
apt clean -y
#install conda
wget https://repo.continuum.io/miniconda/Miniconda2-4.5.12-Linux-x86_64.sh -O /opt/miniconda.sh
bash /opt/miniconda.sh -b -p /opt/miniconda
export PATH="/opt/miniconda/bin:$PATH"
conda config --add channels r
conda config --add channels conda-forge
conda config --add channels bioconda
conda install --yes roary=3.12.0
conda clean --all --yes
%environment
export PATH="/opt/miniconda/bin:$PATH"
%runscript
roary "$@"
%labels
author Ignacio Ferres
Collection
- Name: iferres/Singularity_recipes
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/iferres-Singularity_recipes-roary |
collection name | iferres/Singularity_recipes |
branch | master |
tag | roary |
commit | 8fc6b3a2e5f326003230e6341e527eb699cab521 |
version (container hash) | c7bbdc7846df890dcd43a818a1419bcf |
build date | 2019-10-18T09:34:33.857Z |
size (MB) | 2264 |
size (bytes) | 742490143 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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