iferres/Singularity_recipes:pgap
$ singularity pull shub://iferres/Singularity_recipes:pgap
Singularity Recipe
Bootstrap: docker
From: ubuntu:16.04
%post
export DEBIAN_FRONTEND=noninteractive
apt update
apt install -y software-properties-common
add-apt-repository -y ppa:openjdk-r/ppa
apt update && apt upgrade -y
apt install -y make gcc patch wget mafft mcl openjdk-7-jre-headless phylip libexpat-dev pkg-config libgd-dev build-essential libxml-libxml-perl
apt clean -y
export PERL_MM_USE_DEFAULT=1
cpan -i App::cpanminus
cpanm -i Statistics::LineFit
cpanm -i Statistics::Distributions
cpanm -i Bio::AlignIO # Falla acá en build pero no en shell (?)
wget https://downloads.sourceforge.net/project/pgap/PGAP-1.2.1/PGAP-1.2.1.tar.gz
tar -xzf PGAP-1.2.1.tar.gz
rm -f PGAP-1.2.1.tar.gz
chmod a+x PGAP-1.2.1/*.pl
%runscript
/PGAP-1.2.1/PGAP.pl "$@"
%labels
author Ignacio Ferres
Collection
- Name: iferres/Singularity_recipes
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/iferres-Singularity_recipes-pgap |
collection name | iferres/Singularity_recipes |
branch | master |
tag | pgap |
commit | 4e3800fbad819fb96836528025170a2836aa564a |
version (container hash) | aaf62701980603563555920c5843b5f7 |
build date | 2020-10-19T08:34:46.683Z |
size (MB) | 827 |
size (bytes) | 300822559 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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