iferres/Singularity_recipes:pgap

$ singularity pull shub://iferres/Singularity_recipes:pgap

Singularity Recipe

Bootstrap: docker
From: ubuntu:16.04


%post
	export DEBIAN_FRONTEND=noninteractive
	apt update
	apt install -y software-properties-common
	add-apt-repository -y ppa:openjdk-r/ppa  
	apt update && apt upgrade -y
	apt install -y make gcc patch wget mafft mcl openjdk-7-jre-headless phylip libexpat-dev pkg-config libgd-dev build-essential libxml-libxml-perl
	apt clean -y
	export PERL_MM_USE_DEFAULT=1
	cpan -i App::cpanminus
	cpanm -i Statistics::LineFit
	cpanm -i Statistics::Distributions
	cpanm -i Bio::AlignIO # Falla acá en build pero no en shell (?)
	wget https://downloads.sourceforge.net/project/pgap/PGAP-1.2.1/PGAP-1.2.1.tar.gz
	tar -xzf PGAP-1.2.1.tar.gz 
	rm -f PGAP-1.2.1.tar.gz
	chmod a+x PGAP-1.2.1/*.pl

%runscript 
	/PGAP-1.2.1/PGAP.pl "$@"

%labels 
	author Ignacio Ferres

Collection


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key value
id /containers/iferres-Singularity_recipes-pgap
collection name iferres/Singularity_recipes
branch master
tag pgap
commit 4e3800fbad819fb96836528025170a2836aa564a
version (container hash) aaf62701980603563555920c5843b5f7
build date 2020-10-19T08:34:46.683Z
size (MB) 827
size (bytes) 300822559
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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