iferres/Singularity_recipes:get_homologues
$ singularity pull shub://iferres/Singularity_recipes:get_homologues
Singularity Recipe
Bootstrap: docker
From: ubuntu:16.04
# Install dependencies from repos: GD for graphics, libidn11 for BLAST+
%post
export DEBIAN_FRONTEND=noninteractive
apt update && apt upgrade -y
apt install -y software-properties-common
add-apt-repository ppa:anton+/photo-video-apps -y
apt update && apt upgrade -y
apt install -y git htop curl make geeqie evince default-jre libgd-gd2-perl libidn11 libpython2.7 procps bc wget r-base r-base-dev
apt autoremove && apt clean -y
#curl -L http://cpanmin.us | perl - App::cpanminus
cpan -i App::cpanminus
export PERL_MM_USE_DEFAULT=1
cpanm -if Inline::C
cpanm -if Inline::CPP@0.75
git clone https://github.com/eead-csic-compbio/get_homologues.git
cd get_homologues/
git checkout 37fe5738fe2f7911bd1979b9cebebf3bedee69c1
perl install.pl no_databases
chmod a+wr db/
cd ../
%environment
export PATH="/get_homologues:${PATH}"
%runscript
#perl get_homologues/get_homologues.pl
get_homologues.pl
%labels
author Ignacio Ferres
Collection
- Name: iferres/Singularity_recipes
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/iferres-Singularity_recipes-get_homologues |
collection name | iferres/Singularity_recipes |
branch | master |
tag | get_homologues |
commit | 92f333e5574a67d7f8e20b7f9aa96281e508fe39 |
version (container hash) | 3604733037a576babc2c651c33955d94 |
build date | 2019-10-18T09:44:12.746Z |
size (MB) | 1598 |
size (bytes) | 628219935 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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