iferres/Singularity_recipes:get_homologues

$ singularity pull shub://iferres/Singularity_recipes:get_homologues

Singularity Recipe

Bootstrap: docker
From: ubuntu:16.04


# Install dependencies from repos: GD for graphics, libidn11 for BLAST+
%post
	export DEBIAN_FRONTEND=noninteractive
	apt update && apt upgrade -y
	apt install -y software-properties-common
	add-apt-repository ppa:anton+/photo-video-apps -y
	apt update && apt upgrade -y
	apt install -y git htop curl make geeqie evince default-jre libgd-gd2-perl libidn11 libpython2.7 procps bc wget r-base r-base-dev
	apt autoremove && apt clean -y
	#curl -L http://cpanmin.us | perl - App::cpanminus
	cpan -i App::cpanminus
	export PERL_MM_USE_DEFAULT=1
	cpanm -if Inline::C 
	cpanm -if Inline::CPP@0.75
	git clone https://github.com/eead-csic-compbio/get_homologues.git
	cd get_homologues/
	git checkout 37fe5738fe2f7911bd1979b9cebebf3bedee69c1
	perl install.pl no_databases
	chmod a+wr db/
	cd ../

%environment 
	export PATH="/get_homologues:${PATH}"

%runscript
	#perl get_homologues/get_homologues.pl
	get_homologues.pl
	

%labels
	author Ignacio Ferres

Collection


View on Datalad

Metrics

key value
id /containers/iferres-Singularity_recipes-get_homologues
collection name iferres/Singularity_recipes
branch master
tag get_homologues
commit 92f333e5574a67d7f8e20b7f9aa96281e508fe39
version (container hash) 3604733037a576babc2c651c33955d94
build date 2019-10-18T09:44:12.746Z
size (MB) 1598
size (bytes) 628219935
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.