idot/Singularity_recipes:canu
$ singularity pull shub://idot/Singularity_recipes:canu
Singularity Recipe
Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%help
A container to hold the assembler canu.
Run `singularity exec canu.simg canu`
%environment
PATH=/usr/local/bin:$PATH
%post
apt update
apt install -y software-properties-common
apt-add-repository universe
apt update
apt install -y wget build-essential
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
#============================================
# INSTALL CANU
#============================================
apt install -y openjdk-8-jre gnuplot
VERSION="1.7.1"
URL=https://github.com/marbl/canu/archive/v"$VERSION".tar.gz
wget -qO- "$URL" | tar xvz
cd canu-${VERSION}/src
make -j 8
cd ../Linux-amd64/bin/
echo "export PATH=$(pwd):$PATH" >> $SINGULARITY_ENVIRONMENT
Collection
- Name: idot/Singularity_recipes
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/idot-Singularity_recipes-canu |
collection name | idot/Singularity_recipes |
branch | master |
tag | canu |
commit | 17251dd3f863416f3f78af485ed6d25f1656adc1 |
version (container hash) | fc390f53d92048c678e9c9d4eb603100 |
build date | 2018-07-30T16:14:05.775Z |
size (MB) | 1261 |
size (bytes) | 421568543 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.