idot/Singularity_recipes:canu

$ singularity pull shub://idot/Singularity_recipes:canu

Singularity Recipe

Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/

%help
  A container to hold the assembler canu.
  Run `singularity exec canu.simg canu`

%environment
  PATH=/usr/local/bin:$PATH

%post
    apt update
    apt install -y software-properties-common
    apt-add-repository universe
    apt update
    apt install -y wget build-essential 
    export LC_ALL=C.UTF-8
    export LANG=C.UTF-8
    echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
    echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT


    #============================================
    # INSTALL CANU
    #============================================
    apt install -y openjdk-8-jre gnuplot
    VERSION="1.7.1"
    URL=https://github.com/marbl/canu/archive/v"$VERSION".tar.gz
    wget -qO- "$URL" | tar xvz
    cd canu-${VERSION}/src
    make -j 8
    cd ../Linux-amd64/bin/
    echo "export PATH=$(pwd):$PATH" >> $SINGULARITY_ENVIRONMENT

Collection


View on Datalad

Metrics

key value
id /containers/idot-Singularity_recipes-canu
collection name idot/Singularity_recipes
branch master
tag canu
commit 17251dd3f863416f3f78af485ed6d25f1656adc1
version (container hash) fc390f53d92048c678e9c9d4eb603100
build date 2018-07-30T16:14:05.775Z
size (MB) 1261
size (bytes) 421568543
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.