icaoberg/singularity-rstudio:latest
$ singularity pull shub://icaoberg/singularity-rstudio:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu:16.04
IncludeCmd: yes
%help
Container R-base
%runscript
exec "$@"
%environment
export LC_ALL=C
export PATH=/usr/games:$PATH
%post
/usr/bin/apt-get update && /usr/bin/apt-get -y upgrade
/usr/bin/apt-get update --fix-missing
/usr/bin/apt-get install -y --no-install-recommends apt-utils
/usr/bin/apt-get install -y software-properties-common
# Make folders for CBD HPC cluster
if [ ! -d /images ]; then mkdir /images; fi
if [ ! -d /projects ]; then mkdir /containers; fi
if [ ! -d /containers ]; then mkdir /containers; fi
if [ ! -d /share ]; then mkdir /share; fi
if [ ! -d /scratch ]; then mkdir /scratch; fi
%appinstall R
/usr/bin/apt-get install r-base
%appenv R
BEST_APP=R
export BEST_APP
%apphelp R
For more information visit https://www.rdocumentation.org/
%apprun R
R "$@"
%appinstall Rscript
/usr/bin/apt-get install r-base
%appenv Rscript
BEST_APP=Rscript
export BEST_APP
%apphelp Rscript
For more information visit https://www.rdocumentation.org/
%apprun Rscript
Rscript "$@"
Collection
- Name: icaoberg/singularity-rstudio
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/icaoberg-singularity-rstudio-latest |
collection name | icaoberg/singularity-rstudio |
branch | master |
tag | latest |
commit | 78d23562ee8a4388ed6e3950ca3be1516525e42e |
version (container hash) | fb19ed286a29a8a8aa07e747b2b36908 |
build date | 2020-03-05T14:06:06.682Z |
size (MB) | 705 |
size (bytes) | 278618143 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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