hexmek/container:metawap_docker

$ singularity pull shub://hexmek/container:metawap_docker

Singularity Recipe

Bootstrap: docker
From: quay.io/biocontainers/metawrap:1.2--hdfd78af_2 


%post
    CONFFILE=$(which config-metawrap)
    echo """# Paths to custon pipelines and scripts of metaWRAP
SOFT=/usr/local/bin/metawrap-scripts
PIPES=/usr/local/bin/metawrap-modules

# OPTIONAL databases (see 'Databases' section of metaWRAP README for details)
# path to kraken standard database
KRAKEN_DB=/path/to/database

# path to indexed human genome (see metaWRAP website for guide). This includes files hg38.bitmask and hg38.srprism.*
BMTAGGER_DB=/hps/research/finn/saary/database/metawrap/bmtagger

# paths to BLAST databases
BLASTDB=/path/to/database/NCBI_nt
TAXDUMP=/hps/research/finn/saary/database/metawrap/NCBI_tax""" > $CONFFILE

%environment
    export LC_ALL=C

Collection


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Metrics

key value
id /containers/hexmek-container-metawap_docker
collection name hexmek/container
branch master
tag metawap_docker
commit 5ae21ec240f9a753af23f945582705fdd1c5bc59
version (container hash) c92bed2e10dfdb8a8e2df41aba49ac18ed9c54f8f7179faf4a937fdd0b2e5f49
build date 2021-04-15T08:45:34.895Z
size (MB) 1279.08984375
size (bytes) 1341222912
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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