hexmek/container:metawap_docker
$ singularity pull shub://hexmek/container:metawap_docker
Singularity Recipe
Bootstrap: docker
From: quay.io/biocontainers/metawrap:1.2--hdfd78af_2
%post
CONFFILE=$(which config-metawrap)
echo """# Paths to custon pipelines and scripts of metaWRAP
SOFT=/usr/local/bin/metawrap-scripts
PIPES=/usr/local/bin/metawrap-modules
# OPTIONAL databases (see 'Databases' section of metaWRAP README for details)
# path to kraken standard database
KRAKEN_DB=/path/to/database
# path to indexed human genome (see metaWRAP website for guide). This includes files hg38.bitmask and hg38.srprism.*
BMTAGGER_DB=/hps/research/finn/saary/database/metawrap/bmtagger
# paths to BLAST databases
BLASTDB=/path/to/database/NCBI_nt
TAXDUMP=/hps/research/finn/saary/database/metawrap/NCBI_tax""" > $CONFFILE
%environment
export LC_ALL=C
Collection
- Name: hexmek/container
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/hexmek-container-metawap_docker |
collection name | hexmek/container |
branch | master |
tag | metawap_docker |
commit | 5ae21ec240f9a753af23f945582705fdd1c5bc59 |
version (container hash) | c92bed2e10dfdb8a8e2df41aba49ac18ed9c54f8f7179faf4a937fdd0b2e5f49 |
build date | 2021-04-15T08:45:34.895Z |
size (MB) | 1279.08984375 |
size (bytes) | 1341222912 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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