hexmek/container:cat

$ singularity pull shub://hexmek/container:cat

Singularity Recipe

Bootstrap: debootstrap
OSVersion: testing
MirrorURL: http://httpredir.debian.org/debian


%post
    apt update
    apt upgrade -y
    apt install -y make cmake g++ wget curl  zip python3
    mkdir /opt/CAT
    cd /opt/CAT
    wget -O CAT.zip https://github.com/dutilh/CAT/archive/v5.0.3.zip
    unzip CAT.zip
    mv CAT-5.0.3/* .
    mv CAT_pack/* .

    # diamond
    cd /opt
    wget https://github.com/bbuchfink/diamond/releases/download/v0.9.30/diamond-linux64.tar.gz
    tar xzvf diamond-linux64.tar.gz
    mv diamond /usr/bin/


%environment
    export LC_ALL=C     
    export PATH="/opt/CAT/:$PATH"

Collection


View on Datalad

Metrics

key value
id /containers/hexmek-container-cat
collection name hexmek/container
branch master
tag cat
commit 8f707d33436ef69439657f9cc659dfdc8d3c9f6b
version (container hash) 354a4d80fa43181384d4936e6116c5cf
build date 2020-03-08T16:37:35.263Z
size (MB) 606.0
size (bytes) 242745375
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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