hexmek/container:cat
$ singularity pull shub://hexmek/container:cat
Singularity Recipe
Bootstrap: debootstrap
OSVersion: testing
MirrorURL: http://httpredir.debian.org/debian
%post
apt update
apt upgrade -y
apt install -y make cmake g++ wget curl zip python3
mkdir /opt/CAT
cd /opt/CAT
wget -O CAT.zip https://github.com/dutilh/CAT/archive/v5.0.3.zip
unzip CAT.zip
mv CAT-5.0.3/* .
mv CAT_pack/* .
# diamond
cd /opt
wget https://github.com/bbuchfink/diamond/releases/download/v0.9.30/diamond-linux64.tar.gz
tar xzvf diamond-linux64.tar.gz
mv diamond /usr/bin/
%environment
export LC_ALL=C
export PATH="/opt/CAT/:$PATH"
Collection
- Name: hexmek/container
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/hexmek-container-cat |
collection name | hexmek/container |
branch | master |
tag | cat |
commit | 8f707d33436ef69439657f9cc659dfdc8d3c9f6b |
version (container hash) | 354a4d80fa43181384d4936e6116c5cf |
build date | 2020-03-08T16:37:35.263Z |
size (MB) | 606.0 |
size (bytes) | 242745375 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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