heinzlab/chip-seq-pipeline:latest
$ singularity pull shub://heinzlab/chip-seq-pipeline:latest
Singularity Recipe
Bootstrap: docker
From: continuumio/miniconda3
%labels
MAINTAINER Carlos Guzman <cag104@eng.ucsd.edu>
DESCRIPTION Container image containing all requirements for the adapted heinzlab/chip-seq-pipeline
VERSION 0.1dev
%files
environment.yml /
%environment
PATH=/opt/conda/envs/chipseq-0.1dev/bin:$PATH
export PATH
%post
apt-get -y update
apt-get -y install build-essential libboost-all-dev libgsl-dev libz-dev
/opt/conda/bin/conda env create -f /environment.yml
/opt/conda/bin/conda clean -a
git clone https://github.com/rnakato/SSP.git
cd SSP
make
mv bin/ssp /opt/conda/envs/chipseq-0.1dev/bin
Collection
- Name: heinzlab/chip-seq-pipeline
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/heinzlab-chip-seq-pipeline-latest |
collection name | heinzlab/chip-seq-pipeline |
branch | master |
tag | latest |
commit | b78007b86037cf43d69051f45836b02f1b8bff54 |
version (container hash) | 71902750b408b843f5c3f34e70bb52c9 |
build date | 2018-10-31T13:30:53.693Z |
size (MB) | 3723 |
size (bytes) | 1248268319 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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