heinzlab/chip-seq-pipeline:latest

$ singularity pull shub://heinzlab/chip-seq-pipeline:latest

Singularity Recipe

Bootstrap: docker
From: continuumio/miniconda3

%labels
    MAINTAINER Carlos Guzman <cag104@eng.ucsd.edu>
    DESCRIPTION Container image containing all requirements for the adapted heinzlab/chip-seq-pipeline
    VERSION 0.1dev

%files
    environment.yml /

%environment
	PATH=/opt/conda/envs/chipseq-0.1dev/bin:$PATH
	export PATH

%post
    apt-get -y update
    apt-get -y install build-essential libboost-all-dev libgsl-dev libz-dev

    /opt/conda/bin/conda env create -f /environment.yml
    /opt/conda/bin/conda clean -a

    git clone https://github.com/rnakato/SSP.git
    cd SSP
    make
    mv bin/ssp /opt/conda/envs/chipseq-0.1dev/bin

Collection


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Metrics

key value
id /containers/heinzlab-chip-seq-pipeline-latest
collection name heinzlab/chip-seq-pipeline
branch master
tag latest
commit b78007b86037cf43d69051f45836b02f1b8bff54
version (container hash) 71902750b408b843f5c3f34e70bb52c9
build date 2018-10-31T13:30:53.693Z
size (MB) 3723
size (bytes) 1248268319
SIF Download URL (please use pull with shub://)
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