granek/r24_inseq:latest

$ singularity pull shub://granek/r24_inseq:latest

Singularity Recipe

BootStrap: shub
From: granek/singularity-rstudio-base:3.6.0

%labels
    Maintainer Josh Granek
    Image_Version 009

##------------------------------------------------------------
## Build example:
## sudo singularity build inseq_rstudio.simg Singularity.rstudio
## sudo singularity build ~/container_images/inseq_rstudio_v007.simg Singularity.rstudio
##
## Run example:
## singularity run inseq_rstudio.simg ls
## singularity run --app rstudio inseq_rstudio.simg
##------------------------------------------------------------

%runscript
  exec "${@}"

%apprun rstudio
  exec rserver "${@}"

%environment
  export PATH=/usr/lib/rstudio-server/bin:${PATH}
  export SHELL=/bin/bash
  export LC_ALL=en_US.UTF-8
  export LANG=en_US.UTF-8
  export LANGUAGE=en_US.UTF-8

%post
  # Install extra stuff
  apt-get update
  apt-get install -y --no-install-recommends \
    bowtie \
    python3-biopython
   apt-get clean
   rm -rf /var/lib/apt/lists/*

Collection

• Name: granek/r24_inseq
• License: None

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