frankwillmore/singularity_image_recipes:mcnda040512_gcc7_py36
$ singularity pull shub://frankwillmore/singularity_image_recipes:mcnda040512_gcc7_py36
Singularity Recipe
Bootstrap: docker
From: centos
%post
# install development tools
yum update -y
yum install -y wget bzip2 which make libfabric
#####
# miniconda install
############
# change this if you want different versions
CONDAVER=3
VERSION=4.5.12
BASE_DIR=/miniconda$CONDAVER
PREFIX_PATH=$BASE_DIR/$VERSION
DOWNLOAD_PATH=$BASE_DIR/DOWNLOADS
# make install area
mkdir -p $PREFIX_PATH
mkdir -p $DOWNLOAD_PATH
MINICONDA_INSTALL_FILE=Miniconda$CONDAVER-$VERSION-Linux-x86_64.sh
echo Downloading miniconda installer
wget https://repo.continuum.io/miniconda/$MINICONDA_INSTALL_FILE -P $DOWNLOAD_PATH
chmod +x $DOWNLOAD_PATH/Miniconda$CONDAVER-$VERSION-Linux-x86_64.sh
echo Installing Miniconda
$DOWNLOAD_PATH/Miniconda$CONDAVER-$VERSION-Linux-x86_64.sh -b -p $PREFIX_PATH -u
# add conda to environment
export PATH=$PREFIX_PATH/bin:$PATH
echo moving into $PREFIX_PATH
cd $PREFIX_PATH
echo CONDA BINARY: $(which conda)
echo CONDA VERSION: $(conda --version)
echo Setting intel channel to the primary
conda config --add channels intel
echo install tensorflow dependencies and other things
conda install -y tensorflow -c intel
echo install keras
conda install -y keras
echo install pytorch
conda install -y pytorch-cpu torchvision-cpu -c pytorch
echo install gcc
conda install -y gcc_linux-64 gxx_linux-64
find $PREFIX_PATH/bin -type f -name "x86_64-conda_cos6-linux-gnu-*" -exec bash -c "python -c \"print('{}'.split('linux-gnu-')[-1])\" | xargs -I file ln -s {} $PREFIX_PATH/bin/file" \;
echo which gcc: $(/bin/which gcc)
echo which g++: $(/bin/which g++)
echo gcc version
gcc --version
MPICH_VERSION=3.3
echo installing mpich $MPICH_VERSION
mkdir /mpich
cd /mpich
wget http://www.mpich.org/static/downloads/$MPICH_VERSION/mpich-$MPICH_VERSION.tar.gz
tar xf mpich-$MPICH_VERSION.tar.gz --strip-components=1
./configure --prefix=/mpich/install --disable-wrapper-rpath --disable-fortran
make -j 4 install
# setup MPICH
export PATH=$PATH:/mpich/install/bin
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/mpich/install/lib
echo install mpi4py
conda install -y mpi4py
# install keras and horovod
echo install horovod
CC=/mpich/install/bin/mpicc CXX=/mpich/install/bin/mpicxx pip install --no-cache-dir horovod
%environment
export PATH=/miniconda3/4.5.12/bin:$PATH
%runscript
python /test/keras_mnist.py
Collection
- Name: frankwillmore/singularity_image_recipes
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/frankwillmore-singularity_image_recipes-mcnda040512_gcc7_py36 |
collection name | frankwillmore/singularity_image_recipes |
branch | master |
tag | mcnda040512_gcc7_py36 |
commit | 838665c3185212b4e6516ceb326dcc5587c5b931 |
version (container hash) | c7bee0d9d8a34d54a0fc4ccb83edb7b3 |
build date | 2019-06-07T11:19:42.516Z |
size (MB) | 5912 |
size (bytes) | 2555293727 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.