endrebak/singularity_recipes:saige_0_26
$ singularity pull shub://endrebak/singularity_recipes:saige_0_26
Singularity Recipe
BootStrap: docker
From: continuumio/anaconda3
%post
export PATH=/opt/conda/bin:${PATH}
echo 'export PATH=/opt/conda/bin:${PATH}' >> $SINGULARITY_ENVIRONMENT
conda config --add channels r
conda config --add channels bioconda
conda config --add channels conda-forge
conda install r r-matrix r-rcppeigen r-data.table r-rcppparallel r-rcpparmadillo r-rcpp lapack
wget https://cran.r-project.org/src/contrib/SPAtest_2.0.2.tar.gz
R CMD INSTALL SPAtest_2.0.2.tar.gz
wget 'https://zenodo.org/record/1181962/files/SAIGE_0.26_R_x86_64-pc-linux-gnu.tar.gz' -O SAIGE.tar.gz
R CMD INSTALL SAIGE.tar.gz
Collection
- Name: endrebak/singularity_recipes
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/endrebak-singularity_recipes-saige_0_26 |
collection name | endrebak/singularity_recipes |
branch | master |
tag | saige_0_26 |
commit | 8ffe4b0e6f50f6b430b91792dd9591d2404ef3cc |
version (container hash) | 100003862d118f365624ae92adc8ebf5 |
build date | 2018-03-07T14:12:48.404Z |
size (MB) | 3664 |
size (bytes) | 1589268511 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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