endrebak/singularity_recipes:saige_0_26

$ singularity pull shub://endrebak/singularity_recipes:saige_0_26

Singularity Recipe

BootStrap: docker
From: continuumio/anaconda3

%post
export PATH=/opt/conda/bin:${PATH}
echo 'export PATH=/opt/conda/bin:${PATH}' >> $SINGULARITY_ENVIRONMENT
conda config --add channels r
conda config --add channels bioconda
conda config --add channels conda-forge
conda install r r-matrix r-rcppeigen r-data.table r-rcppparallel r-rcpparmadillo r-rcpp lapack
wget https://cran.r-project.org/src/contrib/SPAtest_2.0.2.tar.gz
R CMD INSTALL SPAtest_2.0.2.tar.gz
wget 'https://zenodo.org/record/1181962/files/SAIGE_0.26_R_x86_64-pc-linux-gnu.tar.gz' -O SAIGE.tar.gz
R CMD INSTALL SAIGE.tar.gz

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key value
id /containers/endrebak-singularity_recipes-saige_0_26
collection name endrebak/singularity_recipes
branch master
tag saige_0_26
commit 8ffe4b0e6f50f6b430b91792dd9591d2404ef3cc
version (container hash) 100003862d118f365624ae92adc8ebf5
build date 2018-03-07T14:12:48.404Z
size (MB) 3664
size (bytes) 1589268511
SIF Download URL (please use pull with shub://)
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Singularity Recipe Singularity Recipe on Datalad
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