endrebak/singularity_recipes:chipseeker_1_14_0
$ singularity pull shub://endrebak/singularity_recipes:chipseeker_1_14_0
Singularity Recipe
BootStrap: docker
From: continuumio/anaconda3
%post
export PATH=/opt/conda/bin:${PATH}
echo 'export PATH=/opt/conda/bin:${PATH}' >> $SINGULARITY_ENVIRONMENT
conda config --add channels r
conda config --add channels bioconda
conda config --add channels conda-forge
conda install bioconductor-chipseeker bioconductor-txdb.celegans.ucsc.ce11.refgene bioconductor-txdb.celegans.ucsc.ce6.ensgene bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene bioconductor-txdb.drerio.ucsc.danrer10.refgene bioconductor-txdb.hsapiens.ucsc.hg18.knowngene bioconductor-txdb.hsapiens.ucsc.hg19.knowngene bioconductor-txdb.hsapiens.ucsc.hg19.lincrnastranscripts bioconductor-txdb.hsapiens.ucsc.hg38.knowngene bioconductor-txdb.mmusculus.ucsc.mm10.ensgene bioconductor-txdb.mmusculus.ucsc.mm10.knowngene bioconductor-txdb.mmusculus.ucsc.mm9.knowngene bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene bioconductor-txdb.scerevisiae.ucsc.saccer2.sgdgene bioconductor-txdb.scerevisiae.ucsc.saccer3.sgdgene bioconductor-org.bt.eg.db bioconductor-org.ce.eg.db bioconductor-org.cf.eg.db bioconductor-org.dm.eg.db bioconductor-org.dr.eg.db bioconductor-org.gg.eg.db bioconductor-org.hs.eg.db bioconductor-org.mm.eg.db bioconductor-org.rn.eg.db bioconductor-org.sc.sgd.db bioconductor-org.ss.eg.db bioconductor-dose bioconductor-reactomepa bioconductor-clusterprofiler
Collection
- Name: endrebak/singularity_recipes
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/endrebak-singularity_recipes-chipseeker_1_14_0 |
collection name | endrebak/singularity_recipes |
branch | master |
tag | chipseeker_1_14_0 |
commit | 4a97fa7dce918b66f717db00a5a4b5fdb9d1a9cb |
version (container hash) | 0f8af44053927f7aa76d22e141a052d9 |
build date | 2018-02-16T17:20:20.108Z |
size (MB) | 8813 |
size (bytes) | 3153326111 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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