elimoss/lathe:htsbox

$ singularity pull shub://elimoss/lathe:htsbox

Singularity Recipe

# Metagenomics Singularity environment definition for htsbox repository
# Eli Moss
# elimoss@stanford.edu
# January 2019

# This environment is used in practice by adding --with-singularity shub://elimoss/metagenomics_workflows:longread
# to the snakemake command.

bootstrap: docker
from: ubuntu:19.04

# this command assumes at least singularity 2.3
%environment
%post
    apt-get update
    apt-get install -y eatmydata
    eatmydata apt-get install -y \
    git ca-certificates zlib1g-dev libbz2-dev liblzma-dev bedtools
    apt-get clean

    apt-get install -y build-essential

		git clone https://github.com/lh3/htsbox.git
		cd htsbox
		make
		cp htsbox /usr/bin/

Collection

• Name: elimoss/lathe
• License: MIT License

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