edgano/mBed-nf:latest
$ singularity pull shub://edgano/mBed-nf:latest
Singularity Recipe
Bootstrap:docker
From:debian:jessie
%labels
MAINTAINER Edgar Garriga
%post
apt-get update
apt-get install -y --no-install-recommends ed less vim-tiny wget git
apt-get install -y --no-install-recommends python build-essential cmake curl libargtable2-0
apt-get install -y --no-install-recommends python-biopython python-numpy ruby python-setuptools
apt-get install -y --no-install-recommends default-jdk libpng-dev
##
# install SeqFilter
##
git clone https://github.com/edgano/mBed-nf
cd mBed-nf/bin/SeqFilter
rm -rf lib
make
##
# install mBed
##
cd ../mBed
make
%environment
export PATH=/mBed-nf/bin/mBed/:/mBed-nf/bin/SeqFilter:$PATH
Collection
- Name: edgano/mBed-nf
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/edgano-mBed-nf-latest |
collection name | edgano/mBed-nf |
branch | master |
tag | latest |
commit | c770be65da5d88c9205675e2747b13afe657861e |
version (container hash) | dbae504732edc14294ee05239461f818 |
build date | 2018-03-01T21:03:58.440Z |
size (MB) | 756 |
size (bytes) | 308367391 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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