edgano/mBed-nf:latest

$ singularity pull shub://edgano/mBed-nf:latest

Singularity Recipe

Bootstrap:docker
From:debian:jessie

%labels
MAINTAINER Edgar Garriga

%post
  apt-get update
  apt-get install -y --no-install-recommends ed less vim-tiny wget git
  apt-get install -y --no-install-recommends python build-essential cmake curl libargtable2-0
  apt-get install -y --no-install-recommends python-biopython python-numpy ruby python-setuptools
  apt-get install -y --no-install-recommends default-jdk libpng-dev

##
# install SeqFilter
##
  git clone https://github.com/edgano/mBed-nf
  cd mBed-nf/bin/SeqFilter
  rm -rf lib
  make

##
# install mBed
##
  cd ../mBed
  make

%environment
export PATH=/mBed-nf/bin/mBed/:/mBed-nf/bin/SeqFilter:$PATH

Collection


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key value
id /containers/edgano-mBed-nf-latest
collection name edgano/mBed-nf
branch master
tag latest
commit c770be65da5d88c9205675e2747b13afe657861e
version (container hash) dbae504732edc14294ee05239461f818
build date 2018-03-01T21:03:58.440Z
size (MB) 756
size (bytes) 308367391
SIF Download URL (please use pull with shub://)
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