dynverse/ti_calista:latest
$ singularity pull shub://dynverse/ti_calista:latest
Singularity Recipe
#######################################################################################
## DO NOT EDIT THIS FILE! This file was automatically generated from the dockerfile. ##
## Run babelwhale::convert_dockerfile_to_singularityrecipe() to update this file. ##
#######################################################################################
Bootstrap: shub
From: dynverse/dynwrap:bioc
%labels
version 0.1.7
%files
. /code
%post
chmod -R 755 '/code'
R -e 'devtools::install_cran("destiny")'
apt-get update && apt-get install -y libcgal-dev libglu1-mesa-dev libglu1-mesa-dev libjpeg-dev libtiff-dev tcl-dev patch
cd / && \
git clone https://github.com/CABSEL/CALISTA.git && \
cd CALISTA && \
rm -rf .git && \
find . -type f \( -iname \*.zip -o -iname \*.csv -o -iname \*.txt \) -exec rm {} + && \
wget https://gist.githubusercontent.com/rcannood/ed97cacc2f373de6f3a6bb7320e2c677/raw/935044855cd204aee6eba821367b95669bb14784/calista.patch && \
patch -p0 < calista.patch
Rscript /CALISTA/CALISTA-R/install_packs.R
%runscript
exec Rscript /code/run.R
Collection
- Name: dynverse/ti_calista
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/dynverse-ti_calista-latest |
collection name | dynverse/ti_calista |
branch | master |
tag | latest |
commit | 01e0fcab8c09a63a8eaba3c7e9ecf9daaa7e37fc |
version (container hash) | 6c58d599b03b9f2ad012a46e0c2a12d3 |
build date | 2018-10-29T20:59:12.371Z |
size (MB) | 2484 |
size (bytes) | 923217951 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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