dynverse/dynwrap:bioc

$ singularity pull shub://dynverse/dynwrap:bioc

Singularity Recipe

Bootstrap: docker

From: rocker/tidyverse

%labels
    version 0.2.0.8

%environment
    OPENBLAS_NUM_THREADS=1
    NUMEXPR_NUM_THREADS=1
    MKL_NUM_THREADS=1
    OMP_NUM_THREADS=1

    export OPENBLAS_NUM_THREADS NUMEXPR_NUM_THREADS MKL_NUM_THREADS OMP_NUM_THREADS

%post
    apt-get update && apt-get install -y libhdf5-dev libssh-dev
    R -e 'options(echo = TRUE); install.packages("minqa")' # weird problem where minqa can't install when .Rprofile isn't empty
    echo 'utils::setRepositories(ind=1:4)' > ~/.Rprofile
    R -e 'devtools::install_cran("Rcpp")'
    R -e 'devtools::install_github("dynverse/dyndimred", dependencies = TRUE)'
    R -e 'devtools::install_github("dynverse/dynwrap", dependencies = TRUE)'
    R -e 'devtools::install_cran(c("RcppEigen", "RSpectra", "RcppArmadillo"))' # preinstall certain rcpp libraries
    R -e 'devtools::install_cran("SingleCellExperiment")'

Collection


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Metrics

key value
id /containers/dynverse-dynwrap-bioc
collection name dynverse/dynwrap
branch devel
tag bioc
commit 97cb7b06d68bd0eae2c07570bdf837cd8e97f774
version (container hash) 78fa64740cb03b5c9d2317f949215837
build date 2019-03-28T15:14:02.974Z
size (MB) 2141
size (bytes) 815562783
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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