dynverse/dynwrap:bioc
$ singularity pull shub://dynverse/dynwrap:bioc
Singularity Recipe
Bootstrap: docker
From: rocker/tidyverse
%labels
version 0.2.0.8
%environment
OPENBLAS_NUM_THREADS=1
NUMEXPR_NUM_THREADS=1
MKL_NUM_THREADS=1
OMP_NUM_THREADS=1
export OPENBLAS_NUM_THREADS NUMEXPR_NUM_THREADS MKL_NUM_THREADS OMP_NUM_THREADS
%post
apt-get update && apt-get install -y libhdf5-dev libssh-dev
R -e 'options(echo = TRUE); install.packages("minqa")' # weird problem where minqa can't install when .Rprofile isn't empty
echo 'utils::setRepositories(ind=1:4)' > ~/.Rprofile
R -e 'devtools::install_cran("Rcpp")'
R -e 'devtools::install_github("dynverse/dyndimred", dependencies = TRUE)'
R -e 'devtools::install_github("dynverse/dynwrap", dependencies = TRUE)'
R -e 'devtools::install_cran(c("RcppEigen", "RSpectra", "RcppArmadillo"))' # preinstall certain rcpp libraries
R -e 'devtools::install_cran("SingleCellExperiment")'
Collection
- Name: dynverse/dynwrap
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/dynverse-dynwrap-bioc |
collection name | dynverse/dynwrap |
branch | devel |
tag | bioc |
commit | 97cb7b06d68bd0eae2c07570bdf837cd8e97f774 |
version (container hash) | 78fa64740cb03b5c9d2317f949215837 |
build date | 2019-03-28T15:14:02.974Z |
size (MB) | 2141 |
size (bytes) | 815562783 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.