dp2ski/guppy_aci:rec

$ singularity pull shub://dp2ski/guppy_aci:rec

Singularity Recipe

Bootstrap: docker
From: centos:centos7

%runscript
    exec /opt/guppy/ont-guppy-cpu/bin/guppy_basecaller "$@"

%environment
    PATH = /opt/guppy/ont-guppy-cpu/bin/:$PATH

%post
    # commands to be executed inside container during bootstrap
    yum update -y
    yum install -y epel-release
    yum install -y terminator
    yum install -y centos-release-scl
    yum install -y vte-devel
    yum install -y vte291-devel
    yum install -y vte-profile
    yum install -y devtoolset-7-gcc*
    scl enable devtoolset-7 bash
    yum -y groups install "Development Tools"
    yum -y groups install "Base"
    yum -y install git cmake gcc-c++ gcc binutils \
    libX11-devel libXpm-devel libXft-devel libXext-devel
    yum -y install gcc-gfortran openssl-devel pcre-devel \
    mesa-libGL-devel mesa-libGLU-devel glew-devel ftgl-devel mysql-devel \
    fftw-devel cfitsio-devel graphviz-devel \
    avahi-compat-libdns_sd-devel libldap-dev python-devel \
    libxml2-devel gsl-devel

    mkdir -p /opt/guppy/
    cd /opt/guppy
    wget https://mirror.oxfordnanoportal.com/software/analysis/ont-guppy-cpu_2.3.5_linux64.tar.gz
    tar -xzvf ont-guppy-cpu_2.3.5_linux64.tar.gz

    #ACI mappings
    mkdir -p /storage/home
    mkdir -p /storage/work
    mkdir -p /gpfs/group
    mkdir -p /gpfs/scratch
    mkdir -p /var/spool/torque

Collection


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Metrics

key value
id /containers/dp2ski-guppy_aci-rec
collection name dp2ski/guppy_aci
branch master
tag rec
commit c724feef8eb21be433ed3cfa609170876275d9b8
version (container hash) dd898db23888ff2c111158f82c387ac0
build date 2019-03-21T18:05:58.244Z
size (MB) 1963
size (bytes) 751157279
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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