dp2ski/guppy_aci:rec
$ singularity pull shub://dp2ski/guppy_aci:rec
Singularity Recipe
Bootstrap: docker
From: centos:centos7
%runscript
exec /opt/guppy/ont-guppy-cpu/bin/guppy_basecaller "$@"
%environment
PATH = /opt/guppy/ont-guppy-cpu/bin/:$PATH
%post
# commands to be executed inside container during bootstrap
yum update -y
yum install -y epel-release
yum install -y terminator
yum install -y centos-release-scl
yum install -y vte-devel
yum install -y vte291-devel
yum install -y vte-profile
yum install -y devtoolset-7-gcc*
scl enable devtoolset-7 bash
yum -y groups install "Development Tools"
yum -y groups install "Base"
yum -y install git cmake gcc-c++ gcc binutils \
libX11-devel libXpm-devel libXft-devel libXext-devel
yum -y install gcc-gfortran openssl-devel pcre-devel \
mesa-libGL-devel mesa-libGLU-devel glew-devel ftgl-devel mysql-devel \
fftw-devel cfitsio-devel graphviz-devel \
avahi-compat-libdns_sd-devel libldap-dev python-devel \
libxml2-devel gsl-devel
mkdir -p /opt/guppy/
cd /opt/guppy
wget https://mirror.oxfordnanoportal.com/software/analysis/ont-guppy-cpu_2.3.5_linux64.tar.gz
tar -xzvf ont-guppy-cpu_2.3.5_linux64.tar.gz
#ACI mappings
mkdir -p /storage/home
mkdir -p /storage/work
mkdir -p /gpfs/group
mkdir -p /gpfs/scratch
mkdir -p /var/spool/torque
Collection
- Name: dp2ski/guppy_aci
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/dp2ski-guppy_aci-rec |
collection name | dp2ski/guppy_aci |
branch | master |
tag | rec |
commit | c724feef8eb21be433ed3cfa609170876275d9b8 |
version (container hash) | dd898db23888ff2c111158f82c387ac0 |
build date | 2019-03-21T18:05:58.244Z |
size (MB) | 1963 |
size (bytes) | 751157279 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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