dominik-handler/AP_singu:quast
$ singularity pull shub://dominik-handler/AP_singu:quast
Singularity Recipe
Bootstrap: docker
From: ubuntu:latest
%labels
maintainer Dominik Handler <Dominik Handler@imba.oeaw.ac.at>
quast.version 5.0.2
%post
##### System #####
apt update -y
apt upgrade -y
apt install -y build-essential wget zlib1g-dev pkg-config libfreetype6-dev libpng-dev perl openjdk-8-jdk python3 python3-setuptools python3-dev ncbi-blast+ python3-matplotlib
echo "Europe/Dublin" > /etc/timezone
unlink /etc/localtime
dpkg-reconfigure -f noninteractive tzdata
apt install -y locales
export LANGUAGE=en_US.UTF-8
export LANG=en_US.UTF-8
export LC_ALL=en_US.UTF-8
locale-gen en_US.UTF-8
dpkg-reconfigure -f noninteractive locales
##### Quast #####
wget -P /tmp/ https://downloads.sourceforge.net/project/quast/quast-5.0.2.tar.gz
cd /tmp
tar xvzf /tmp/quast-5.0.2.tar.gz
rm /tmp/quast-5.0.2.tar.gz
if [ -d "/quast" ]; then
rm -rf /quast/
fi
mv /tmp/quast-5.0.2 /quast
cd /quast/
python3 ./setup.py install_full
%runscript
quast.py $@
Collection
- Name: dominik-handler/AP_singu
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/dominik-handler-AP_singu-quast |
collection name | dominik-handler/AP_singu |
branch | master |
tag | quast |
commit | 060ad80db789ba311fed8153b2cfad06a15b15e0 |
version (container hash) | 17d2426bf124cd9e11d123cb9c797c7d |
build date | 2019-10-15T13:24:27.599Z |
size (MB) | 4761 |
size (bytes) | 1138012191 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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