dominik-handler/AP_singu:quast

$ singularity pull shub://dominik-handler/AP_singu:quast

Singularity Recipe

Bootstrap: docker
From: ubuntu:latest


%labels
  maintainer Dominik Handler <Dominik Handler@imba.oeaw.ac.at>
  quast.version 5.0.2

%post
  ##### System #####
  apt update -y
  apt upgrade -y
  apt install -y build-essential wget zlib1g-dev pkg-config libfreetype6-dev libpng-dev perl openjdk-8-jdk python3 python3-setuptools python3-dev  ncbi-blast+ python3-matplotlib

echo "Europe/Dublin" > /etc/timezone
unlink /etc/localtime
dpkg-reconfigure -f noninteractive tzdata
apt install -y locales
export LANGUAGE=en_US.UTF-8
export LANG=en_US.UTF-8
export LC_ALL=en_US.UTF-8
locale-gen en_US.UTF-8
dpkg-reconfigure -f noninteractive locales
  

  ##### Quast #####
  wget -P /tmp/ https://downloads.sourceforge.net/project/quast/quast-5.0.2.tar.gz
  cd /tmp
  tar xvzf /tmp/quast-5.0.2.tar.gz
  rm /tmp/quast-5.0.2.tar.gz
  if [ -d "/quast" ]; then
    rm -rf /quast/
  fi
  mv /tmp/quast-5.0.2 /quast
  cd /quast/
  python3 ./setup.py install_full

%runscript
  quast.py $@

Collection


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Metrics

key value
id /containers/dominik-handler-AP_singu-quast
collection name dominik-handler/AP_singu
branch master
tag quast
commit 060ad80db789ba311fed8153b2cfad06a15b15e0
version (container hash) 17d2426bf124cd9e11d123cb9c797c7d
build date 2019-10-15T13:24:27.599Z
size (MB) 4761
size (bytes) 1138012191
SIF Download URL (please use pull with shub://)
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