dominik-handler/AP_singu:purge_dups

$ singularity pull shub://dominik-handler/AP_singu:purge_dups

Singularity Recipe

#minimap2 in singularity

Bootstrap: docker
From: ubuntu:16.04

%labels
  maintainer Dominik Handler <Dominik Handler@imba.oeaw.ac.at>
  purge_dups 1964aaa

%runscript
    "$@"

%post
    apt-get update
    apt-get --assume-yes install wget curl bzip2 git-core build-essential zlib1g-dev python3-dev python3-setuptools

    cd /
    git clone https://github.com/lh3/minimap2
    cd minimap2 && make
    cp minimap2 /usr/bin 

    cd /
    git clone https://github.com/dfguan/purge_dups.git
    cd purge_dups/src && make
    cp /purge_dups/bin/* /usr/bin

    cd /
    git clone https://github.com/dfguan/runner.git
    cd runner && python3 setup.py install 
    #cp bin/* /usr/bin

    cd /
    git clone https://github.com/dfguan/KMC.git 
    cd KMC && make 
    #cp bin/* /usr/bin

%environment


%test

Collection


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Metrics

key value
id /containers/dominik-handler-AP_singu-purge_dups
collection name dominik-handler/AP_singu
branch master
tag purge_dups
commit ca73dc38a5939a062463fded6dcef37dea6776bd
version (container hash) 9a92313f27985451a882658db737d1af42d627af1fa5d475f0487e409bf0d7cf
build date 2021-03-25T16:24:06.613Z
size (MB) 199.48046875
size (bytes) 209170432
SIF Download URL (please use pull with shub://)
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