dominik-handler/AP_singu:purge_dups
$ singularity pull shub://dominik-handler/AP_singu:purge_dups
Singularity Recipe
#minimap2 in singularity
Bootstrap: docker
From: ubuntu:16.04
%labels
maintainer Dominik Handler <Dominik Handler@imba.oeaw.ac.at>
purge_dups 1964aaa
%runscript
"$@"
%post
apt-get update
apt-get --assume-yes install wget curl bzip2 git-core build-essential zlib1g-dev python3-dev python3-setuptools
cd /
git clone https://github.com/lh3/minimap2
cd minimap2 && make
cp minimap2 /usr/bin
cd /
git clone https://github.com/dfguan/purge_dups.git
cd purge_dups/src && make
cp /purge_dups/bin/* /usr/bin
cd /
git clone https://github.com/dfguan/runner.git
cd runner && python3 setup.py install
#cp bin/* /usr/bin
cd /
git clone https://github.com/dfguan/KMC.git
cd KMC && make
#cp bin/* /usr/bin
%environment
%test
Collection
- Name: dominik-handler/AP_singu
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/dominik-handler-AP_singu-purge_dups |
collection name | dominik-handler/AP_singu |
branch | master |
tag | purge_dups |
commit | ca73dc38a5939a062463fded6dcef37dea6776bd |
version (container hash) | 9a92313f27985451a882658db737d1af42d627af1fa5d475f0487e409bf0d7cf |
build date | 2021-03-25T16:24:06.613Z |
size (MB) | 199.48046875 |
size (bytes) | 209170432 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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