dominik-handler/AP_singu:porechop
$ singularity pull shub://dominik-handler/AP_singu:porechop
Singularity Recipe
#porechop in singularity
BootStrap: debootstrap
OSVersion: xenial
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%runscript
porechop "$@"
%post
apt-get -y install wget
apt-get update
apt-get -y install build-essential
apt-get -y install python3.5
apt-get -y install git-core
apt-get -y install python3-setuptools
easy_install3 pip
git clone https://github.com/rrwick/Porechop.git
cd Porechop
python3 setup.py install
mkdir /groups
mkdir /scratch
mkdir /scratch-ii2
mkdir /clustertmp
%test
porechop -h
Collection
- Name: dominik-handler/AP_singu
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/dominik-handler-AP_singu-porechop |
collection name | dominik-handler/AP_singu |
branch | master |
tag | porechop |
commit | d1ba2e26976dcd2b36ab6ebbf27d4d45e875668f |
version (container hash) | 52ad41f8531031407bad5c058f22aa3c |
build date | 2020-03-31T12:47:33.059Z |
size (MB) | 523 |
size (bytes) | 243728415 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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