dominik-handler/AP_singu:porechop

$ singularity pull shub://dominik-handler/AP_singu:porechop

Singularity Recipe

#porechop in singularity

BootStrap: debootstrap
OSVersion: xenial
MirrorURL: http://us.archive.ubuntu.com/ubuntu/

%runscript
    porechop "$@"

%post
    apt-get -y install wget

    apt-get update
    apt-get -y install build-essential
    apt-get -y install python3.5
    apt-get -y install git-core 

    apt-get -y install python3-setuptools
    easy_install3 pip

    git clone https://github.com/rrwick/Porechop.git
    cd Porechop
    python3 setup.py install
   
    mkdir /groups
    mkdir /scratch
    mkdir /scratch-ii2
    mkdir /clustertmp

%test
    porechop -h

Collection


View on Datalad

Metrics

key value
id /containers/dominik-handler-AP_singu-porechop
collection name dominik-handler/AP_singu
branch master
tag porechop
commit d1ba2e26976dcd2b36ab6ebbf27d4d45e875668f
version (container hash) 52ad41f8531031407bad5c058f22aa3c
build date 2020-03-31T12:47:33.059Z
size (MB) 523
size (bytes) 243728415
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.