dominik-handler/AP_singu:pomoxis
$ singularity pull shub://dominik-handler/AP_singu:pomoxis
Singularity Recipe
Bootstrap: docker
From: ubuntu:16.04
%labels
maintainer Dominik Handler <Dominik Handler@imba.oeaw.ac.at
pomoxis v0.2.2
%post
apt-get update
apt-get -y install wget git build-essential zlib1g-dev libbz2-dev liblzma-dev
#fix locales
apt-get clean && apt-get update && apt-get install -y \
locales \
language-pack-en && \
export LANGUAGE=en_US.UTF-8 && \
export LANG=en_US.UTF-8 && \
export LC_ALL=en_US.UTF-8 && \
locale-gen en_US.UTF-8 && \
dpkg-reconfigure --frontend noninteractive locales
#install miniconda
apt-get update
apt-get -y install bzip2 python3-setuptools python3.5
#update to version 1.19.0
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
bash Miniconda3-latest-Linux-x86_64.sh -b -p /Software/anaconda3 && \
rm Miniconda3-latest-Linux-x86_64.sh
PATH="/Software/anaconda3/bin:$PATH"
#insatall conda packages
conda config --add channels defaults
conda config --add channels conda-forge
conda config --add channels bioconda
git clone --recursive https://github.com/nanoporetech/pomoxis
cd pomoxis
CONDA=/Software/anaconda3/ make conda
%environment
PATH="PATH=/Software/anaconda3/bin:${PATH}"
export $PATH
export LD_LIBRARY_PATH=/cm/local/apps/cuda-driver/libs/390.12/lib64:/cm/local/apps/cuda-driver/libs/390.12/lib:/software/171020/software/cuda/9.0.176/extras/CUPTI/lib64:/software/171020/software/cuda/9.0.176/lib64:/cm/local/apps/cuda-driver/libs/390.12/lib64:/cm/local/apps/cuda-driver/libs/390.12/lib:$LD_LIBRARY_PATH
export PATH=/cm/local/apps/cuda-driver/libs/390.12/bin:/software/171020/software/cuda/9.0.176:/software/171020/software/cuda/9.0.176/bin:$PATH
%runscript
$@
Collection
- Name: dominik-handler/AP_singu
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/dominik-handler-AP_singu-pomoxis |
collection name | dominik-handler/AP_singu |
branch | master |
tag | pomoxis |
commit | 7276d9f79e254f090a89495100afdfe489138b6e |
version (container hash) | cca21733530577d5e56ac683545c56dc |
build date | 2019-04-26T18:57:08.095Z |
size (MB) | 1493 |
size (bytes) | 661401631 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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