dominik-handler/AP_singu:ngmlr.txt

$ singularity pull shub://dominik-handler/AP_singu:ngmlr.txt

Singularity Recipe

#ngmlr in singularity

BootStrap: debootstrap
OSVersion: xenial
MirrorURL: http://us.archive.ubuntu.com/ubuntu/

%runscript
    /ngmlr/bin/ngmlr-*/ngmlr "$@"

%post
    apt-get --assume-yes install wget
    apt-get --assume-yes install sudo

    sudo apt-get update
    sudo apt-get --assume-yes install build-essential
    sudo apt-get --assume-yes install zlib1g
    sudo apt-get --assume-yes install cmake
    sudo apt-get update
    sudo apt-get --assume-yes install git-core   
    sudo apt-get --assume-yes install zlib1g-dev     
    
    cd /
    git clone https://github.com/philres/ngmlr.git
    cd ngmlr/
    mkdir -p build
    cd build/
    cmake ..
    make

    cd ../bin/ngmlr-*/

    
    sudo mkdir /groups
    sudo mkdir /clustertmp

%test
    /ngmlr/bin/ngmlr-*/ngmlr -h

Collection


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Metrics

key value
id /containers/dominik-handler-AP_singu-ngmlr.txt
collection name dominik-handler/AP_singu
branch master
tag ngmlr.txt
commit d1ba2e26976dcd2b36ab6ebbf27d4d45e875668f
version (container hash) 05fd3546dc548192249e5893483a218c
build date 2019-01-15T15:20:37.355Z
size (MB) 604
size (bytes) 309137439
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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