dominik-handler/AP_singu:ngmlr

$ singularity pull shub://dominik-handler/AP_singu:ngmlr

Singularity Recipe

#ngmlr in singularity

BootStrap: debootstrap
OSVersion: xenial
MirrorURL: http://us.archive.ubuntu.com/ubuntu/

%runscript
    /ngmlr/bin/ngmlr-*/ngmlr "$@"

%post
    apt-get --assume-yes install wget
    apt-get --assume-yes install sudo

    sudo apt-get update
    sudo apt-get --assume-yes install build-essential
    sudo apt-get --assume-yes install zlib1g
    sudo apt-get --assume-yes install cmake
    sudo apt-get update
    sudo apt-get --assume-yes install git-core   
    sudo apt-get --assume-yes install zlib1g-dev     
    
    cd /
    git clone https://github.com/philres/ngmlr.git
    cd ngmlr/
    mkdir -p build
    cd build/
    cmake ..
    make

    cd ../bin/ngmlr-*/

    
    sudo mkdir /groups
    sudo mkdir /clustertmp

%test
    /ngmlr/bin/ngmlr-*/ngmlr -h

Collection


View on Datalad

Metrics

key value
id /containers/dominik-handler-AP_singu-ngmlr
collection name dominik-handler/AP_singu
branch master
tag ngmlr
commit fad2f9686182d0f4360ef6feef654d8326800612
version (container hash) 8664ef69ded501fb18f90ecbf1f808cb
build date 2020-01-30T14:23:06.134Z
size (MB) 604
size (bytes) 309137439
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.