dominik-handler/AP_singu:nanopolish
$ singularity pull shub://dominik-handler/AP_singu:nanopolish
Singularity Recipe
#nanopolish in singularity
Bootstrap: docker
From: ubuntu:16.04
%labels
maintainer Dominik Handler <Dominik Handler@imba.oeaw.ac.at
Nanopolish v0.11.1
%runscript
/nanopolish/nanopolish "$@"
%post
apt-get update
apt-get -y install wget
apt-get -y install sudo
apt-get update
apt-get -y install build-essential
apt-get -y install zlib1g
apt-get install zlib1g-dev
apt-get -y install git-core
apt-get -y install python3.5
apt-get -y install python3-setuptools
easy_install3 pip
pip install biopython
cd /
git clone --recursive https://github.com/jts/nanopolish.git
cd nanopolish
make
mkdir /groups
mkdir /clustertmp
mkdir /scratch
mkdir /scratch-ii2
%test
/nanopolish/nanopolish
Collection
- Name: dominik-handler/AP_singu
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/dominik-handler-AP_singu-nanopolish |
collection name | dominik-handler/AP_singu |
branch | master |
tag | nanopolish |
commit | 5648d69b61853100663977696bf3315de2e54fbd |
version (container hash) | a68ed6909317feb58319c77fbacf77fc |
build date | 2019-04-03T14:45:46.265Z |
size (MB) | 927 |
size (bytes) | 304865311 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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