dominik-handler/AP_singu:nanopolish

$ singularity pull shub://dominik-handler/AP_singu:nanopolish

Singularity Recipe

#nanopolish in singularity

Bootstrap: docker
From: ubuntu:16.04

%labels
  maintainer Dominik Handler <Dominik Handler@imba.oeaw.ac.at  
  Nanopolish v0.11.1

%runscript
    /nanopolish/nanopolish "$@"

%post
    apt-get update
    apt-get -y install wget
    apt-get -y install sudo

    apt-get update
    apt-get -y install build-essential
    apt-get -y install zlib1g
    apt-get install zlib1g-dev
    apt-get -y install git-core  

    apt-get -y install python3.5
    apt-get -y install python3-setuptools
    easy_install3 pip
    pip install biopython

    cd /
    git clone --recursive https://github.com/jts/nanopolish.git
    cd nanopolish

    make 
    mkdir /groups
    mkdir /clustertmp
    mkdir /scratch
    mkdir /scratch-ii2

%test
    /nanopolish/nanopolish

Collection


View on Datalad

Metrics

key value
id /containers/dominik-handler-AP_singu-nanopolish
collection name dominik-handler/AP_singu
branch master
tag nanopolish
commit 5648d69b61853100663977696bf3315de2e54fbd
version (container hash) a68ed6909317feb58319c77fbacf77fc
build date 2019-04-03T14:45:46.265Z
size (MB) 927
size (bytes) 304865311
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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