dominik-handler/AP_singu:nanoplot
$ singularity pull shub://dominik-handler/AP_singu:nanoplot
Singularity Recipe
#nanoplot in singularity
Bootstrap: docker
From: ubuntu:16.04
%runscript
NanoPlot "$@"
%post
apt-get update
apt-get -y install wget
apt-get -y install sudo
apt-get update
apt-get install bzip2
apt-get -y install python3.5
apt-get -y install python3-setuptools
#update to version 1.19.0
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
bash Miniconda3-latest-Linux-x86_64.sh -b -p /Software/anaconda3 && \
rm Miniconda3-latest-Linux-x86_64.sh
PATH="/Software/anaconda3/bin:$PATH"
conda install -c bioconda nanoplot
# easy_install3 pip
# mkdir -p /NanoTools/
# cd /NanoTools/
# pip install NanoPlot
mkdir /groups
mkdir /scratch
mkdir /scratch-ii2
%environment
PATH="PATH=/Software/anaconda3/bin:${PATH}"
export $PATH
%test
PATH="PATH=/Software/anaconda3/bin:${PATH}"
export $PATH
NanoPlot -h
Collection
- Name: dominik-handler/AP_singu
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/dominik-handler-AP_singu-nanoplot |
collection name | dominik-handler/AP_singu |
branch | master |
tag | nanoplot |
commit | e3373148ec5e6a805ed451502c0afa42d8af9388 |
version (container hash) | 79bb3bcc23ca52886d4d22a518fd329a |
build date | 2020-03-31T11:45:24.003Z |
size (MB) | 2942 |
size (bytes) | 1355952159 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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