dominik-handler/AP_singu:nanoplot

$ singularity pull shub://dominik-handler/AP_singu:nanoplot

Singularity Recipe

#nanoplot in singularity

Bootstrap: docker
From: ubuntu:16.04

%runscript
    NanoPlot "$@"

%post
    apt-get update
    apt-get -y install wget
    apt-get -y install sudo

    apt-get update
    apt-get install bzip2
    apt-get -y install python3.5
 
    apt-get -y install python3-setuptools
    
    #update to version 1.19.0
    wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
    bash Miniconda3-latest-Linux-x86_64.sh -b -p /Software/anaconda3 && \
    rm Miniconda3-latest-Linux-x86_64.sh
    PATH="/Software/anaconda3/bin:$PATH"
    
    conda install -c bioconda nanoplot
    
   # easy_install3 pip

   # mkdir -p /NanoTools/
   # cd /NanoTools/
   # pip install NanoPlot
    
    mkdir /groups
    mkdir /scratch
    mkdir /scratch-ii2

%environment
    PATH="PATH=/Software/anaconda3/bin:${PATH}"
    export $PATH



%test
    PATH="PATH=/Software/anaconda3/bin:${PATH}"
    export $PATH

    NanoPlot -h

Collection


View on Datalad

Metrics

key value
id /containers/dominik-handler-AP_singu-nanoplot
collection name dominik-handler/AP_singu
branch master
tag nanoplot
commit e3373148ec5e6a805ed451502c0afa42d8af9388
version (container hash) 79bb3bcc23ca52886d4d22a518fd329a
build date 2020-03-31T11:45:24.003Z
size (MB) 2942
size (bytes) 1355952159
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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