dominik-handler/AP_singu:mosdepth
$ singularity pull shub://dominik-handler/AP_singu:mosdepth
Singularity Recipe
#mosdepth in singularity
Bootstrap: docker
From: ubuntu:16.04
%labels
maintainer Dominik Handler <Dominik Handler@imba.oeaw.ac.at>
mosdepth v0.24.0
%runscript
mosdepth "$@"
%post
apt-get update
apt-get -y install wget git-all
apt-get -y install sudo
apt-get clean && apt-get update && apt-get install -y \
locales \
language-pack-fi \
language-pack-en && \
export LANGUAGE=en_US.UTF-8 && \
export LANG=en_US.UTF-8 && \
export LC_ALL=en_US.UTF-8 && \
locale-gen en_US.UTF-8 && \
dpkg-reconfigure --frontend noninteractive locales
apt-get update
apt-get install bzip2
apt-get -y install python3.5 python3-dev python3-pip
apt-get -y install python3-setuptools
#update to version 1.19.0
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
bash Miniconda3-latest-Linux-x86_64.sh -b -p /Software/anaconda3 && \
rm Miniconda3-latest-Linux-x86_64.sh
PATH="/Software/anaconda3/bin:$PATH"
apt-get update
apt-get install bzip2
apt-get -y install python3.5 python3-dev python3-pip
apt-get -y install python3-setuptools
#update to version 1.19.0
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
bash Miniconda3-latest-Linux-x86_64.sh -b -p /Software/anaconda3 && \
rm Miniconda3-latest-Linux-x86_64.sh
PATH="/Software/anaconda3/bin:$PATH"
conda config --add channels defaults
conda config --add channels conda-forge
conda config --add channels bioconda
conda install mosdepth
cd
git clone https://github.com/brentp/mosdepth.git
mkdir /groups
mkdir /scratch
mkdir /scratch-ii2
%environment
PATH="PATH=/Software/anaconda3/bin:${PATH}"
export $PATH
%test
Collection
- Name: dominik-handler/AP_singu
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/dominik-handler-AP_singu-mosdepth |
collection name | dominik-handler/AP_singu |
branch | master |
tag | mosdepth |
commit | e55ba3e87926f1ae97d6e85fa8284f37f594a833 |
version (container hash) | 52e281bbf7d26f5c96c8965df7fcf0a9 |
build date | 2021-02-26T21:45:09.369Z |
size (MB) | 1524 |
size (bytes) | 643584031 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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