dominik-handler/AP_singu:medaka
$ singularity pull shub://dominik-handler/AP_singu:medaka
Singularity Recipe
Bootstrap: docker
From: conda/miniconda3
%labels
maintainer Dominik Handler <Dominik Handler@imba.oeaw.ac.at
medaka v0.11.0
%post
set -e
apt-get update
apt-get -y install bzip2 g++ zlib1g-dev libbz2-dev liblzma-dev libffi-dev libncurses5-dev libcurl4-gnutls-dev libssl-dev curl make cmake wget python3-all-dev python-virtualenv git-core sed
wget --no-check-certificate --content-disposition https://github.com/git-lfs/git-lfs/releases/download/v2.9.2/git-lfs-linux-amd64-v2.9.2.tar.gz
tar -zxvf git-lfs-linux-amd64-v2.9.2.tar.gz
cat install.sh | sed 's/git lfs install/git lfs install --skip-repo/' > install_mod.sh
chmod 777 install_mod.sh
./install_mod.sh
cd /
git clone https://github.com/nanoporetech/medaka.git
cd medaka
sed -i 's/tar -xvf minimap2-${MINIMAPVER}_x64-linux.tar.bz2/tar -xvf minimap2-${MINIMAPVER}_x64-linux.tar.bz2 --no-same-owner /' Makefile
make install
%environment
export PATH=/medaka/venv/bin/:${PATH}
%runscript
"$@"
Collection
- Name: dominik-handler/AP_singu
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/dominik-handler-AP_singu-medaka |
collection name | dominik-handler/AP_singu |
branch | master |
tag | medaka |
commit | 521aeb80fc1354863e6781127192ca66bf05ef62 |
version (container hash) | 6b6199841d4fc4c2c7dd421957c307a181666dd3a0fb80983e72c496f3fe5788 |
build date | 2020-05-04T11:51:32.599Z |
size (MB) | 920.44140625 |
size (bytes) | 965152768 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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