dominik-handler/AP_singu:mashmap

$ singularity pull shub://dominik-handler/AP_singu:mashmap

Singularity Recipe

#graphmap in singularity

BootStrap: debootstrap
OSVersion: xenial
MirrorURL: http://us.archive.ubuntu.com/ubuntu/

%runscript
    mashmap "$@"

%post
    apt-get --assume-yes install wget
    apt-get --assume-yes install 

     apt-get update
      
     apt-get -y install software-properties-common build-essential zlib1g-dev git autoconf
     add-apt-repository "deb http://archive.ubuntu.com/ubuntu $(lsb_release -sc) main universe restricted multiverse"
     apt-get update
    
     apt-get -y install gnuplot gnuplot-x11 gnuplot-doc 
     apt-get update
     apt-get -y install xfig transfig xfig-libs libgsl-dev
           
     cd /
     git clone https://github.com/marbl/MashMap.git

     mkdir -p /mashmap
     
     
     cd MashMap
     ./bootstrap.sh
     ./configure --prefix=/mashmap/
     make
     
     cd 
     rm -rf /MashMap
     
     mkdir /groups
     mkdir /scratch
     mkdir /scratch-ii2
     mkdir /clustertmp

%environment
    PATH="PATH=/mashmap/bin/:${PATH}"
    export $PATH


%test
  PATH="PATH=/mashmap/bin/:${PATH}"
  export $PATH
  #mashmap -h

Collection


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Metrics

key value
id /containers/dominik-handler-AP_singu-mashmap
collection name dominik-handler/AP_singu
branch master
tag mashmap
commit d1ba2e26976dcd2b36ab6ebbf27d4d45e875668f
version (container hash) 789d834aab6d5c6cae03f0939e4564b3
build date 2019-01-15T15:20:37.235Z
size (MB) 1070
size (bytes) 479539231
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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