dominik-handler/AP_singu:mashmap
$ singularity pull shub://dominik-handler/AP_singu:mashmap
Singularity Recipe
#graphmap in singularity
BootStrap: debootstrap
OSVersion: xenial
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%runscript
mashmap "$@"
%post
apt-get --assume-yes install wget
apt-get --assume-yes install
apt-get update
apt-get -y install software-properties-common build-essential zlib1g-dev git autoconf
add-apt-repository "deb http://archive.ubuntu.com/ubuntu $(lsb_release -sc) main universe restricted multiverse"
apt-get update
apt-get -y install gnuplot gnuplot-x11 gnuplot-doc
apt-get update
apt-get -y install xfig transfig xfig-libs libgsl-dev
cd /
git clone https://github.com/marbl/MashMap.git
mkdir -p /mashmap
cd MashMap
./bootstrap.sh
./configure --prefix=/mashmap/
make
cd
rm -rf /MashMap
mkdir /groups
mkdir /scratch
mkdir /scratch-ii2
mkdir /clustertmp
%environment
PATH="PATH=/mashmap/bin/:${PATH}"
export $PATH
%test
PATH="PATH=/mashmap/bin/:${PATH}"
export $PATH
#mashmap -h
Collection
- Name: dominik-handler/AP_singu
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/dominik-handler-AP_singu-mashmap |
collection name | dominik-handler/AP_singu |
branch | master |
tag | mashmap |
commit | d1ba2e26976dcd2b36ab6ebbf27d4d45e875668f |
version (container hash) | 789d834aab6d5c6cae03f0939e4564b3 |
build date | 2019-01-15T15:20:37.235Z |
size (MB) | 1070 |
size (bytes) | 479539231 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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