dominik-handler/AP_singu:kentutils
$ singularity pull shub://dominik-handler/AP_singu:kentutils
Singularity Recipe
#ngmlr in singularity
Bootstrap: docker
From: ubuntu:16.04
%runscript
"$@"
%post
apt-get update
apt-get --assume-yes install build-essential zlib1g libpng-dev cmake git-core wget zlib1g-dev uuid-dev
apt-get clean && apt-get update && apt-get install -y \
locales \
language-pack-fi \
language-pack-en && \
export LANGUAGE=en_US.UTF-8 && \
export LANG=en_US.UTF-8 && \
export LC_ALL=en_US.UTF-8 && \
locale-gen en_US.UTF-8 && \
dpkg-reconfigure --frontend noninteractive locales
apt-get update
apt-get --assume-yes install mysql-client libssl-dev openssl libmysqlclient-dev
mkdir -p /Software
cd /Software
#git clone git://github.com/ENCODE-DCC/kentUtils.git
wget http://hgdownload.soe.ucsc.edu/admin/exe/userApps.v358.src.tgz
tar zxvf userApps.v358.src.tgz
mv userApps kentUtils
cd kentUtils
make
mkdir /groups
mkdir /clustertmp
mkdir /scratch
mkdir /scratch-ii2
%environment
export PATH="/Software/kentUtils/bin:$PATH"
export HOME="/Software/kentUtils/"
%test
Collection
- Name: dominik-handler/AP_singu
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/dominik-handler-AP_singu-kentutils |
collection name | dominik-handler/AP_singu |
branch | master |
tag | kentutils |
commit | 65d3ee3c2d4f42f544cc987646be86d31b9ade9d |
version (container hash) | 881f23eb840ac6c7561ec99181e5d0b1 |
build date | 2020-03-31T12:55:23.512Z |
size (MB) | 1750 |
size (bytes) | 633561119 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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