dominik-handler/AP_singu:kentutils

$ singularity pull shub://dominik-handler/AP_singu:kentutils

Singularity Recipe

#ngmlr in singularity

Bootstrap: docker
From: ubuntu:16.04

%runscript

   "$@"

%post
    apt-get update
    apt-get --assume-yes install build-essential zlib1g libpng-dev cmake git-core wget zlib1g-dev uuid-dev

    apt-get clean && apt-get update && apt-get install -y \
       locales \
       language-pack-fi  \
       language-pack-en && \
       export LANGUAGE=en_US.UTF-8 && \
       export LANG=en_US.UTF-8 && \
       export LC_ALL=en_US.UTF-8 && \
       locale-gen en_US.UTF-8 && \
       dpkg-reconfigure --frontend noninteractive locales

    
    apt-get update
    apt-get --assume-yes install mysql-client libssl-dev openssl libmysqlclient-dev  
    
    mkdir -p /Software
    cd /Software
    #git clone git://github.com/ENCODE-DCC/kentUtils.git
    wget http://hgdownload.soe.ucsc.edu/admin/exe/userApps.v358.src.tgz
    tar zxvf userApps.v358.src.tgz 
    mv userApps kentUtils

    cd kentUtils
    make
    
    mkdir /groups
    mkdir /clustertmp
    mkdir /scratch
    mkdir /scratch-ii2

%environment
  export  PATH="/Software/kentUtils/bin:$PATH"
  export HOME="/Software/kentUtils/"

%test

Collection


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Metrics

key value
id /containers/dominik-handler-AP_singu-kentutils
collection name dominik-handler/AP_singu
branch master
tag kentutils
commit 65d3ee3c2d4f42f544cc987646be86d31b9ade9d
version (container hash) 881f23eb840ac6c7561ec99181e5d0b1
build date 2020-03-31T12:55:23.512Z
size (MB) 1750
size (bytes) 633561119
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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