dominik-handler/AP_singu:homer-tools

$ singularity pull shub://dominik-handler/AP_singu:homer-tools

Singularity Recipe

#homer-tools in singularity

Bootstrap: docker
From: ubuntu:16.04

%runscript
    "$@"

%post
    apt-get update
    apt-get -y install wget
    apt-get -y install sudo

    cd / && \
    apt-get update -y && \
    apt-get install -y build-essential cmake curl ed gdebi-core git libsm6 libxrender1 libfontconfig1 lsb-release nettle-dev python-setuptools ruby software-properties-common vim wget zlib1g-dev
    mkdir /Software && \
    cd /Software
    wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
    bash Miniconda3-latest-Linux-x86_64.sh -b -p /Software/anaconda3 && \
    rm Miniconda3-latest-Linux-x86_64.sh
    
    PATH="/Software/anaconda3/bin:$PATH"

    conda config --add channels defaults
    conda config --add channels conda-forge
    conda config --add channels bioconda
    
    conda install homer

    conda clean --all

    apt-get clean
    
    mkdir /groups
    mkdir /scratch
    mkdir /scratch-ii2
    mkdir /clustertmp

%environment
    PATH="PATH=/Software/anaconda3/bin:${PATH}"
    export $PATH

%test
  PATH="PATH=/Software/anaconda3/bin:${PATH}"
  export $PATH

Collection


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Metrics

key value
id /containers/dominik-handler-AP_singu-homer-tools
collection name dominik-handler/AP_singu
branch master
tag homer-tools
commit d1ba2e26976dcd2b36ab6ebbf27d4d45e875668f
version (container hash) b3359a0fdb192aef0c94e072beed53b8
build date 2019-09-16T07:41:49.584Z
size (MB) 1149
size (bytes) 386551839
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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