dominik-handler/AP_singu:homer-tools
$ singularity pull shub://dominik-handler/AP_singu:homer-tools
Singularity Recipe
#homer-tools in singularity
Bootstrap: docker
From: ubuntu:16.04
%runscript
"$@"
%post
apt-get update
apt-get -y install wget
apt-get -y install sudo
cd / && \
apt-get update -y && \
apt-get install -y build-essential cmake curl ed gdebi-core git libsm6 libxrender1 libfontconfig1 lsb-release nettle-dev python-setuptools ruby software-properties-common vim wget zlib1g-dev
mkdir /Software && \
cd /Software
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
bash Miniconda3-latest-Linux-x86_64.sh -b -p /Software/anaconda3 && \
rm Miniconda3-latest-Linux-x86_64.sh
PATH="/Software/anaconda3/bin:$PATH"
conda config --add channels defaults
conda config --add channels conda-forge
conda config --add channels bioconda
conda install homer
conda clean --all
apt-get clean
mkdir /groups
mkdir /scratch
mkdir /scratch-ii2
mkdir /clustertmp
%environment
PATH="PATH=/Software/anaconda3/bin:${PATH}"
export $PATH
%test
PATH="PATH=/Software/anaconda3/bin:${PATH}"
export $PATH
Collection
- Name: dominik-handler/AP_singu
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/dominik-handler-AP_singu-homer-tools |
collection name | dominik-handler/AP_singu |
branch | master |
tag | homer-tools |
commit | d1ba2e26976dcd2b36ab6ebbf27d4d45e875668f |
version (container hash) | b3359a0fdb192aef0c94e072beed53b8 |
build date | 2019-09-16T07:41:49.584Z |
size (MB) | 1149 |
size (bytes) | 386551839 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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