dominik-handler/AP_singu:albacore

$ singularity pull shub://dominik-handler/AP_singu:albacore

Singularity Recipe

#albacore in singularity

Bootstrap: docker
From: ubuntu:16.04

%runscript
    read_fast5_basecaller.py "$@"

%post
    apt-get update
    apt-get -y install wget
    apt-get -y install sudo

    apt-get update
    apt-get -y install python3.5

    apt-get -y install python3-setuptools
    easy_install3 pip

    mkdir -p /albacore/
    cd /albacore/
    wget https://mirror.oxfordnanoportal.com/software/analysis/ont_albacore-2.3.3-cp35-cp35m-manylinux1_x86_64.whl
          

    pip3 install ont_albacore-*.whl\
    
    mkdir /groups
    mkdir /clustertmp
    mkdir /scratch
    mkdir /scratch-ii2

%test
    read_fast5_basecaller.py -h

Collection

• Name: dominik-handler/AP_singu
• License: None

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