dnousome/JWCI_ComputationalBio-:latest
$ singularity pull shub://dnousome/JWCI_ComputationalBio-:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu:latest
%environment
PATH=/usr/loca/bin:$PATH
%post
apt-get -y update
apt-get -y install wget git autoconf build-essential libbz2-dev liblzma-dev zlib1g-dev libncurses5-dev #python bwa fastqc
####Add STAR
git clone https://github.com/alexdobin/STAR/ STAR
cp STAR/bin/Linux_x86_64_static/STAR /usr/local/bin
####Add samtools/htslib/bcftools
git clone https://github.com/samtools/htslib htslib
cd htslib
autoheader
autoconf
./configure
make
make install
cd ~
git clone https://github.com/samtools/samtools samtools
cd samtools
autoheader
autoconf -Wno-syntax
./configure
make
make install
cd ~
git clone https://github.com/samtools/bcftools bcftools
cd bcftools
autoheader
autoconf
./configure
make
make install
cd ~
export LD_LIBRARY_PATH=/usr/local/lib
%labels
Maintainer Darryl Nousome dnousome@gmail.com
Collection
- Name: dnousome/JWCI_ComputationalBio-
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/dnousome-JWCI_ComputationalBio--latest |
collection name | dnousome/JWCI_ComputationalBio- |
branch | master |
tag | latest |
commit | f801e44f63b290260a0ae15ccdfb9b950384c5b3 |
version (container hash) | 7647052de66eacdaefa6bad95e01c556 |
build date | 2018-07-28T02:46:42.406Z |
size (MB) | 867 |
size (bytes) | 523952159 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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