dnousome/JWCI_ComputationalBio-:latest

$ singularity pull shub://dnousome/JWCI_ComputationalBio-:latest

Singularity Recipe

Bootstrap: docker
From: ubuntu:latest

%environment
	PATH=/usr/loca/bin:$PATH

%post
	apt-get -y update
	apt-get -y install wget git autoconf build-essential libbz2-dev liblzma-dev zlib1g-dev libncurses5-dev  #python bwa fastqc 


####Add STAR
git clone https://github.com/alexdobin/STAR/ STAR
cp STAR/bin/Linux_x86_64_static/STAR /usr/local/bin

####Add samtools/htslib/bcftools
git clone https://github.com/samtools/htslib htslib
cd htslib
autoheader
autoconf
./configure
make
make install
cd ~

git clone https://github.com/samtools/samtools samtools
cd samtools
autoheader
autoconf -Wno-syntax
./configure
make
make install
cd ~

git clone https://github.com/samtools/bcftools bcftools
cd bcftools
autoheader
autoconf
./configure
make
make install
cd ~

export LD_LIBRARY_PATH=/usr/local/lib 

%labels
Maintainer Darryl Nousome dnousome@gmail.com

Collection


View on Datalad

Metrics

key value
id /containers/dnousome-JWCI_ComputationalBio--latest
collection name dnousome/JWCI_ComputationalBio-
branch master
tag latest
commit f801e44f63b290260a0ae15ccdfb9b950384c5b3
version (container hash) 7647052de66eacdaefa6bad95e01c556
build date 2018-07-28T02:46:42.406Z
size (MB) 867
size (bytes) 523952159
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.