datalad/datalad-neuroimaging:latest

$ singularity pull shub://datalad/datalad-neuroimaging:latest

Singularity Recipe

#
# This container provides a full Python3-based installation of DataLad
# for neuroimaging (http://datalad.org) using the latest stable release
# at the time the container is built.
#
# Copyright (c) 2018, Michael Hanke. MIT license
#
# Changelog
# ---------
# 0.1.2
#  - Test suite runs in container
#
# 0.1
#  - First official release of the DataLad extension for neuroimaging
#
#######################################################################

Bootstrap:docker
From:neurodebian:latest

%post
    echo "Configuring the environment"
    apt-get -y update

    # setup the container sources themselves
    apt-get -y install eatmydata
    eatmydata apt-get -y install gnupg wget locales

    # we need a UTF locale for DataLad to work properly
    echo "en_US.UTF-8 UTF-8" >> /etc/locale.gen
    locale-gen

    # bare essentials to pull everything else in
    eatmydata apt-get -y install --no-install-recommends git git-annex-standalone python3-pip

    eatmydata apt-get -y install --no-install-recommends python3-setuptools python3-wheel less rsync git-remote-gcrypt aria2 libexempi3 python3-libxmp

    # just for scrapy
    eatmydata apt-get -y install --no-install-recommends python3-twisted

    pip3 install --system datalad_neuroimaging

    # clean up
    apt-get clean


%environments
    unset PYTHONPATH

%runscript
    datalad "$@"

%help
    This is DataLad for Neuroimaging. Run with --help for more info.

%test
    datalad test datalad_neuroimaging

Collection

• Name: datalad/datalad-neuroimaging
• License: Other

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