d-w-moore/singularity-icommands-4.2.1:latest
$ singularity pull shub://d-w-moore/singularity-icommands-4.2.1:latest
Singularity Recipe
Bootstrap: debootstrap
OSVersion: xenial
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%help
iRODS Version 4.2.2
$ singularity run icommands.4.2.2.simg [icommand] [args]
$ singularity run --app iinit icommands.4.2.2.simg
$ singularity run --app iinit icommands.4.2.2.simg [args]
Where [args] in
--irods_host String
--irods_port Integer
--irods_user_name String
--irods_zone_name String
--irods_password String
--irods_default_resource String
--irods_home String
%setup
mkdir -p ${SINGULARITY_ROOTFS}/code
%files
iinit.sh /code/iinit.sh
%labels
Maintainer Michael J. Stealey
Maintainer_Email stealey@renci.org
iRODS_Version 4.2.2
%environment
export IRODS_VERSION=4.2.2
%post
export IRODS_VERSION=4.2.2
apt-get update
apt-get install -y \
wget \
sudo \
apt-transport-https
wget https://github.com/stedolan/jq/releases/download/jq-1.5/jq-linux64
chmod +x jq-linux64
mv jq-linux64 /usr/bin/jq
wget -qO - https://packages.irods.org/irods-signing-key.asc | \
sudo apt-key add -
echo "deb [arch=amd64] https://packages.irods.org/apt/ xenial main" | \
sudo tee /etc/apt/sources.list.d/renci-irods.list
apt-get update
apt-get install -y \
irods-icommands=${IRODS_VERSION} \
libxml2
%apprun iinit
exec /bin/bash /code/iinit.sh "${@}"
%runscript
exec "${@}"
%test
exec ihelp
Collection
- Name: d-w-moore/singularity-icommands-4.2.1
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/d-w-moore-singularity-icommands-4.2.1-latest |
collection name | d-w-moore/singularity-icommands-4.2.1 |
branch | master |
tag | latest |
commit | 724d2f8c193bb7253d9c9fc7550d3c0f7b7b509c |
version (container hash) | 580c3c7ca162b4d0ddcb23b7edaa9f0f |
build date | 2018-05-23T02:20:48.076Z |
size (MB) | 480 |
size (bytes) | 174526495 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.