cyang31/containers:ubuntu_pre

$ singularity pull shub://cyang31/containers:ubuntu_pre

Singularity Recipe

Bootstrap: docker
From: nvidia/cuda:10.1-cudnn7-runtime-ubuntu16.04

%environment 
  SHELL=/bin/bash
  export SHELL
  export HDF5_USE_FILE_LOCKING='FALSE'
  export PATH=/usr/local/cuda/bin:$PATH
  export CPATH=/usr/local/cuda/include:$CPATH
  export LD_LIBRARY_PATH=/usr/local/cuda/lib64:$LD_LIBRARY_PATH
  
%setup
# runs on host
# the path to the image is $SINGULARITY_ROOTFS

%post
# post-setup script

# load environment variables
. /environment

# use bash as default shell
echo 'SHELL=/bin/bash' >> /environment

# make environment file executable
chmod +x /environment

# default mount paths
mkdir /scratch

# fix this issue: https://github.com/singularityware/singularity/issues/1182#issuecomment-381796545
touch /usr/bin/nvidia-smi
apt-get update && apt-get -y install locales
locale-gen en_US.UTF-8
apt-get -y --force-yes install vim wget bzip2 git
apt-get -y install build-essential
wget https://repo.anaconda.com/archive/Anaconda3-5.2.0-Linux-x86_64.sh
bash ./Anaconda3-5.2.0-Linux-x86_64.sh -b -p /opt/anaconda3
export PATH=$PATH:/opt/anaconda3/bin
conda create -n torch-env python=3.6
chmod +x /opt/anaconda3/bin/activate
/opt/anaconda3/bin/activate torch-env
conda update -n base conda
conda install numpy ninja pyyaml mkl mkl-include setuptools cmake cffi typing_extensions future six requests dataclasses
conda install -c pytorch magma-cuda101
pip install Pillow 
pip install matplotlib 
pip install tqdm 
pip install h5py
pip install pandas
pip install wrapt --upgrade --ignore-installed
pip install comet_ml
pip install pyyaml
pip install simpleitk

%runscript
# executes with the singularity run command
# delete this section to use existing docker ENTRYPOINT command
echo "Welcome to Singularity Container pytorch ubuntu 16.04"

%test
# test that script is a success

Collection

• Name: cyang31/containers
• License: None

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