connor-lab/singularity-recipes:trim_galore

$ singularity pull shub://connor-lab/singularity-recipes:trim_galore

Singularity Recipe

Bootstrap: docker
From: alpine:3.8

%post
    apk update
    apk upgrade
    apk add git make
    apk add bash curl fontconfig gcc bzip2-dev libc-dev ncurses-dev openjdk8-jre ttf-dejavu xz-dev zlib-dev
    apk add perl python2 python2-dev py2-pip

    pip install cutadapt

    cd /usr/local/bin
    curl -fsSL "https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.8.zip" -o fastqc_v0.11.8.zip
    unzip fastqc_v0.11.8.zip
    find /usr/local/bin/FastQC -name "fastqc" -maxdepth 1 -exec chmod +x {} \;
    find /usr/local/bin/FastQC -name "fastqc" -maxdepth 1 -perm /u+x -exec ln -s {} /usr/local/bin \;

    cd /usr/local/bin
    curl -fsSL "https://github.com/FelixKrueger/TrimGalore/archive/0.5.0.tar.gz" | tar -xz
    find /usr/local/bin/ -name "trim_galore" -exec ln -s {} /usr/local/bin \;

%labels
    Maintainer m-bull
    Version trim_galore-0.5.0

Collection


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Metrics

key value
id /containers/connor-lab-singularity-recipes-trim_galore
collection name connor-lab/singularity-recipes
branch master
tag trim_galore
commit 3b2f76898f2518a737bc995646da3f2092caa156
version (container hash) 29b57da54637ce67d2912a26e40d5f38
build date 2020-11-05T17:10:37.904Z
size (MB) 366
size (bytes) 181887007
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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