connor-lab/singularity-recipes:trim_galore
$ singularity pull shub://connor-lab/singularity-recipes:trim_galore
Singularity Recipe
Bootstrap: docker
From: alpine:3.8
%post
apk update
apk upgrade
apk add git make
apk add bash curl fontconfig gcc bzip2-dev libc-dev ncurses-dev openjdk8-jre ttf-dejavu xz-dev zlib-dev
apk add perl python2 python2-dev py2-pip
pip install cutadapt
cd /usr/local/bin
curl -fsSL "https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.8.zip" -o fastqc_v0.11.8.zip
unzip fastqc_v0.11.8.zip
find /usr/local/bin/FastQC -name "fastqc" -maxdepth 1 -exec chmod +x {} \;
find /usr/local/bin/FastQC -name "fastqc" -maxdepth 1 -perm /u+x -exec ln -s {} /usr/local/bin \;
cd /usr/local/bin
curl -fsSL "https://github.com/FelixKrueger/TrimGalore/archive/0.5.0.tar.gz" | tar -xz
find /usr/local/bin/ -name "trim_galore" -exec ln -s {} /usr/local/bin \;
%labels
Maintainer m-bull
Version trim_galore-0.5.0
Collection
- Name: connor-lab/singularity-recipes
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/connor-lab-singularity-recipes-trim_galore |
collection name | connor-lab/singularity-recipes |
branch | master |
tag | trim_galore |
commit | 3b2f76898f2518a737bc995646da3f2092caa156 |
version (container hash) | 29b57da54637ce67d2912a26e40d5f38 |
build date | 2020-11-05T17:10:37.904Z |
size (MB) | 366 |
size (bytes) | 181887007 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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